Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1174 ATGGATAAATCTGAGCAGACTCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCATGTGATAGGTGTTGCAGCAAGTGCTAGCCAAATGGCTTATTCTTCTCACTACCCGACTGCTCCTATGATGGCATCTGGTACACCTGCTGTAGTTGTGCCTTCACCRACGCAGTCTCCAACCGCTTTTTCCAATTCCCCKCACCARCTTGCATACCAGCAAGCGCAACACTTCCATCACCAGCAACAGCAGCAACAGCAGCAGCAGCTTCAACTRTTCTGGGCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAGAACCACAGCCTCCCCCTTGCTCGCATTAAAAAGATCATGAAAGCCGATGAAGATGTCCGGATGATTTCAGCAGAAGCYCCAGTAATATTTGCAAAAGCATGTGAAATGTTCATYCTGGAGTTGACTTTGCGATCTTGGATCCACACCGAAGAGAACAAGAGGAGAACTCTGCAAAAGAATGATATAGCAGCTGCTATTTCGAGAAATGATGTTTTTGATTTCTTGGTTGATATCATTCCAAGAGATGAGTTGAAAGAGGAGGGACTCGGAATAGCAAAGGCTACTATTCCAATAGTGGGTTCTCCGGCTGATATGCCATATTATTATGTCTCTCCGCAGCACCCTGTAGGGCCTCCAGGGATGATAATGGGAAAGCCAGTTGATCAAGCAGCACTGTATTCYACACAGCAGCCTCGAGCTCCRATGGCKTTCATGCCATGGCCGCAGGCGCCCTCGCAACAGCAGCCACCCCAACAGGAACAAACAGACTCTTGA 816 0.4681 MDKSEQTQQQQQQQQQQQQHVIGVAASASQMAYSSHYPTAPMMASGTPAVVVPSPTQSPTAFSNSPHQLAYQQAQHFHHQQQQQQQQQLQLFWANQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGIAKATIPIVGSPADMPYYYVSPQHPVGPPGMIMGKPVDQAALYSTQQPRAPMAFMPWPQAPSQQQPPQQEQTDS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1174 271 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 13 265 - -
Amo07g1174 271 SUPERFAMILY Histone-fold 67 182 IPR009072 GO:0046982
Amo07g1174 271 MobiDBLite consensus disorder prediction 249 271 - -
Amo07g1174 271 MobiDBLite consensus disorder prediction 1 21 - -
Amo07g1174 271 Pfam Core histone H2A/H2B/H3/H4 64 173 IPR007125 GO:0003677
Amo07g1174 271 Gene3D Histone, subunit A 71 188 IPR009072 GO:0046982
Amo07g1174 271 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 13 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1174 Amo-Chr7 25849560 25852626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1174 89 217 CCAAT-HAP5 Transcription Factor Family AT1G56170 88.462 1.08e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo07g1174 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1174 K08066 - gmx:100796987 386.341