LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo07g1131	ATGGAAAGGAGCGTTAGCAGAACCCACAAGAAGCCAATGAGCCTTAACGACTCTCATCATCGCTTCCTTCAAGACCTCTCCGCTCATCCTAAATCCAAACCCTCTCCCTCTCCCTCTGCCTCCGAGAAGGAGCACGATGAAACTCCCATTCAATCAGATGATCATACTATTCCCCGATTCTCTGCTATCACCGACTTCGATTCTCCTATCGGGCCTGACTCGGAGGAGAAACCCTCTTCCATCGAGGTCAAACCTCCGCGCTCTTCTCCGAAGGAAATTTCACAGGCTTCATTGGGGACAACGCGTAATGACGAGAAGAAGACCAAGCTGAAGTTGCAGGGTCGTCGCCGCCTCTGCAAAGTTGCGACTTCAGACGATTGTGATAAGGAGGCAGCGGTTGATGAATCCAGGTTCGATGAGCTCATCGAGCTTGATTCGCCACTTCCGGCACCCAAAAACGTGATCCAGATTGACGATAGTGTCGGTAAGAACGACATTAGGGATATTTTGAATGAGTTGAATTCAAAGTTCGAGTTGCTGTCAGTTGAGAGGAAGCGAGAGACGAAGCAGGTGAAACCGATTGAGGGTTCTTCAGCTTTGTTTAGAGGAAAGGAAACTTATGAGGATGATGAGGTCGTAGAGTTCGGGAGTGCGGGGTCTTCATTCTCTCCACAGCAGGATCCGAGTAACGACCAGTCACAGGGTGCCAAGTATGCTGTTGGTGATGCCGGAATTGAGTATGTGGAAGATGATGACTCTCCTGCCAAGKSTGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCTCCTGCCAAGKSTGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCAGATGATTCTGTTGAAGAATTGGTTAATTTTGAGCCAAAGGGTGATGGCTCCATCACTCTGCCAGGCCCCAAATATACTTTTAAGTTGCCCTCTAAAATTGCGAAAATGTTGTATCCACATCAGAGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGYTTGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTATCTTGCTGGACTCTTTCATTCTCGAATTATTAAAAGGGCATTGATTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAGGAATTATCCGCTGTTGGTCTTTCTGAAAAGACGAGAGAATATTTTGGAACTAATACAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTAACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTGCGAGGGAGTTATCATTTTGATGATGAGGACAATGAAGATGGTGCCACATGGGACTATATGATCCTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGGGCTAAAAGTTTGCTTGAGATACCATGTAGCCACCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGCCCTGAGTTACTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAAGTACCCATACTTCGTGGAAATGACAAACATGCTACGGACAGAGATAAGCGTGTAGGATCTGCTATAGCAAAGGACTTAAGAGATCGTATTCAACCTTACTTTTTGCGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGACAAAACAACTGCAAAACTTTCCAAGAAAGAAGAGATTATTGTTTGGCTTCGATTGACTAGTATTCAGCGACATCTATATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGTTAATGTTGCTGAAAAATTGGCGATGCACATAGCAGATGTTACAGACACAGATAGGTTCAAAAATGAGCATGGTCATGATGTATCATGCAAAATTTCTTTCATCATGTCATTATTGGATAATCTGATCCCAGAAGGGCATAGTGTCCTTATCTTTTCTCAGACTCGCAAAATGCTTAACATTATTCAGGAATGCCTAGCATCCAAAGGTTATGACTTTCTACGGATTGATGGAACAACAAAAGCCTGTGACAGATTAAGGATTGTTAATGAATTCCAAGCAGGTGCAAGTGCCCCTATATTTCTGTTGACATCTCAAGTAGGTGGTTTAGGACTCACACTCACAAGAGCAGATCGTGTTATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTCGACCGTGCATATCGTATTGGTCAAAAGAAAGATGTTCTTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAGAACTGCTACTGAACAAAAAGAACAAACTCGCTACTTTAGTCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAGGGGTTTGATGTATCTGTTACCCAACGACAATTGGATGAGGAGCATGATGGTCAACATACATTGAATGACACTTTTAAAGCACATATAGAATTCCTGAGAAGTCAAGGTATAGCAGGAGTTAGCCACCATAGTTTACTCTTTTCCAAAACAGGACCAGTTCAAGCTGCTCCTGAAGATGATGATATGACGAGGAGGAATCAAGGGACTAGSTATATYGGTACTTCAGTATCGTCTTCTTCAAATGACCGAATGGCTGATGGAGCTGAGTTTGCCTCTAAACCCAAGGATTTAGATCGAAGCAAAAAGGGTTTTTCCCCTAGCAGCGATGGTAAAATGACAGAGTCGGAAATCAAAGATAGAATTAAGCGGCTCTCTCAAACTCTGTCAAATACGGCGATGATTTCTAGATTACCGGATAAGGGGGCGAAACTACAGAAAAGGTTGACGGAGCTGAATTCGGAGCTTGCCAGATTAGGGATGGAAGAAAGAACTGGTGCTGATCTGGATGATTTCACCAGTGAGTTTCAAAGAGTGTTGAATGTATAG	3117	0.4315	MERSVSRTHKKPMSLNDSHHRFLQDLSAHPKSKPSPSPSASEKEHDETPIQSDDHTIPRFSAITDFDSPIGPDSEEKPSSIEVKPPRSSPKEISQASLGTTRNDEKKTKLKLQGRRRLCKVATSDDCDKEAAVDESRFDELIELDSPLPAPKNVIQIDDSVGKNDIRDILNELNSKFELLSVERKRETKQVKPIEGSSALFRGKETYEDDEVVEFGSAGSSFSPQQDPSNDQSQGAKYAVGDAGIEYVEDDDSPAKXAGGDGGIEYVQDDDSPAKXAGGDGGIEYVQDDDSDDSVEELVNFEPKGDGSITLPGPKYTFKLPSKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGYLAGLFHSRIIKRALIVAPKTLLPHWIKELSAVGLSEKTREYFGTNTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGSYHFDDEDNEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPCSHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEVPILRGNDKHATDRDKRVGSAIAKDLRDRIQPYFLRRLKSEVFNQDDDKTTAKLSKKEEIIVWLRLTSIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVTDTDRFKNEHGHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNIIQECLASKGYDFLRIDGTTKACDRLRIVNEFQAGASAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEEHDGQHTLNDTFKAHIEFLRSQGIAGVSHHSLLFSKTGPVQAAPEDDDMTRRNQGTXYIGTSVSSSSNDRMADGAEFASKPKDLDRSKKGFSPSSDGKMTESEIKDRIKRLSQTLSNTAMISRLPDKGAKLQKRLTELNSELARLGMEERTGADLDDFTSEFQRVLNV*	1039

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo07g1131	1038	Coils	Coil	998	1018	-	-
	Amo07g1131	1038	MobiDBLite	consensus disorder prediction	924	942	-	-
	Amo07g1131	1038	MobiDBLite	consensus disorder prediction	38	53	-	-
	Amo07g1131	1038	MobiDBLite	consensus disorder prediction	249	282	-	-
	Amo07g1131	1038	Coils	Coil	170	190	-	-
	Amo07g1131	1038	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	340	515	IPR014001	-
	Amo07g1131	1038	SMART	helicmild6	716	799	IPR001650	-
	Amo07g1131	1038	Pfam	Helicase conserved C-terminal domain	687	799	IPR001650	-
	Amo07g1131	1038	Pfam	SNF2-related domain	343	635	IPR000330	GO:0005524\|GO:0140658
	Amo07g1131	1038	MobiDBLite	consensus disorder prediction	218	236	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo07g1131	Amo-Chr7	23129840	23136237	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo07g1131	328	853	RAD5 or RAD16-like Gene Family	AT1G02670	24.653	9.98e-36	143

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Amo07g1131		SNF2_N	2.5e-49	CL0023

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo07g1131	K20093		-	gmx:100779283	1412.51

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