Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1131 ATGGAAAGGAGCGTTAGCAGAACCCACAAGAAGCCAATGAGCCTTAACGACTCTCATCATCGCTTCCTTCAAGACCTCTCCGCTCATCCTAAATCCAAACCCTCTCCCTCTCCCTCTGCCTCCGAGAAGGAGCACGATGAAACTCCCATTCAATCAGATGATCATACTATTCCCCGATTCTCTGCTATCACCGACTTCGATTCTCCTATCGGGCCTGACTCGGAGGAGAAACCCTCTTCCATCGAGGTCAAACCTCCGCGCTCTTCTCCGAAGGAAATTTCACAGGCTTCATTGGGGACAACGCGTAATGACGAGAAGAAGACCAAGCTGAAGTTGCAGGGTCGTCGCCGCCTCTGCAAAGTTGCGACTTCAGACGATTGTGATAAGGAGGCAGCGGTTGATGAATCCAGGTTCGATGAGCTCATCGAGCTTGATTCGCCACTTCCGGCACCCAAAAACGTGATCCAGATTGACGATAGTGTCGGTAAGAACGACATTAGGGATATTTTGAATGAGTTGAATTCAAAGTTCGAGTTGCTGTCAGTTGAGAGGAAGCGAGAGACGAAGCAGGTGAAACCGATTGAGGGTTCTTCAGCTTTGTTTAGAGGAAAGGAAACTTATGAGGATGATGAGGTCGTAGAGTTCGGGAGTGCGGGGTCTTCATTCTCTCCACAGCAGGATCCGAGTAACGACCAGTCACAGGGTGCCAAGTATGCTGTTGGTGATGCCGGAATTGAGTATGTGGAAGATGATGACTCTCCTGCCAAGKSTGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCTCCTGCCAAGKSTGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCAGATGATTCTGTTGAAGAATTGGTTAATTTTGAGCCAAAGGGTGATGGCTCCATCACTCTGCCAGGCCCCAAATATACTTTTAAGTTGCCCTCTAAAATTGCGAAAATGTTGTATCCACATCAGAGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGYTTGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTATCTTGCTGGACTCTTTCATTCTCGAATTATTAAAAGGGCATTGATTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAGGAATTATCCGCTGTTGGTCTTTCTGAAAAGACGAGAGAATATTTTGGAACTAATACAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTAACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTGCGAGGGAGTTATCATTTTGATGATGAGGACAATGAAGATGGTGCCACATGGGACTATATGATCCTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGGGCTAAAAGTTTGCTTGAGATACCATGTAGCCACCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGCCCTGAGTTACTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAAGTACCCATACTTCGTGGAAATGACAAACATGCTACGGACAGAGATAAGCGTGTAGGATCTGCTATAGCAAAGGACTTAAGAGATCGTATTCAACCTTACTTTTTGCGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGACAAAACAACTGCAAAACTTTCCAAGAAAGAAGAGATTATTGTTTGGCTTCGATTGACTAGTATTCAGCGACATCTATATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGTTAATGTTGCTGAAAAATTGGCGATGCACATAGCAGATGTTACAGACACAGATAGGTTCAAAAATGAGCATGGTCATGATGTATCATGCAAAATTTCTTTCATCATGTCATTATTGGATAATCTGATCCCAGAAGGGCATAGTGTCCTTATCTTTTCTCAGACTCGCAAAATGCTTAACATTATTCAGGAATGCCTAGCATCCAAAGGTTATGACTTTCTACGGATTGATGGAACAACAAAAGCCTGTGACAGATTAAGGATTGTTAATGAATTCCAAGCAGGTGCAAGTGCCCCTATATTTCTGTTGACATCTCAAGTAGGTGGTTTAGGACTCACACTCACAAGAGCAGATCGTGTTATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTCGACCGTGCATATCGTATTGGTCAAAAGAAAGATGTTCTTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAGAACTGCTACTGAACAAAAAGAACAAACTCGCTACTTTAGTCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAGGGGTTTGATGTATCTGTTACCCAACGACAATTGGATGAGGAGCATGATGGTCAACATACATTGAATGACACTTTTAAAGCACATATAGAATTCCTGAGAAGTCAAGGTATAGCAGGAGTTAGCCACCATAGTTTACTCTTTTCCAAAACAGGACCAGTTCAAGCTGCTCCTGAAGATGATGATATGACGAGGAGGAATCAAGGGACTAGSTATATYGGTACTTCAGTATCGTCTTCTTCAAATGACCGAATGGCTGATGGAGCTGAGTTTGCCTCTAAACCCAAGGATTTAGATCGAAGCAAAAAGGGTTTTTCCCCTAGCAGCGATGGTAAAATGACAGAGTCGGAAATCAAAGATAGAATTAAGCGGCTCTCTCAAACTCTGTCAAATACGGCGATGATTTCTAGATTACCGGATAAGGGGGCGAAACTACAGAAAAGGTTGACGGAGCTGAATTCGGAGCTTGCCAGATTAGGGATGGAAGAAAGAACTGGTGCTGATCTGGATGATTTCACCAGTGAGTTTCAAAGAGTGTTGAATGTATAG 3117 0.4315 MERSVSRTHKKPMSLNDSHHRFLQDLSAHPKSKPSPSPSASEKEHDETPIQSDDHTIPRFSAITDFDSPIGPDSEEKPSSIEVKPPRSSPKEISQASLGTTRNDEKKTKLKLQGRRRLCKVATSDDCDKEAAVDESRFDELIELDSPLPAPKNVIQIDDSVGKNDIRDILNELNSKFELLSVERKRETKQVKPIEGSSALFRGKETYEDDEVVEFGSAGSSFSPQQDPSNDQSQGAKYAVGDAGIEYVEDDDSPAKXAGGDGGIEYVQDDDSPAKXAGGDGGIEYVQDDDSDDSVEELVNFEPKGDGSITLPGPKYTFKLPSKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGYLAGLFHSRIIKRALIVAPKTLLPHWIKELSAVGLSEKTREYFGTNTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGSYHFDDEDNEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPCSHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEVPILRGNDKHATDRDKRVGSAIAKDLRDRIQPYFLRRLKSEVFNQDDDKTTAKLSKKEEIIVWLRLTSIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVTDTDRFKNEHGHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNIIQECLASKGYDFLRIDGTTKACDRLRIVNEFQAGASAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEEHDGQHTLNDTFKAHIEFLRSQGIAGVSHHSLLFSKTGPVQAAPEDDDMTRRNQGTXYIGTSVSSSSNDRMADGAEFASKPKDLDRSKKGFSPSSDGKMTESEIKDRIKRLSQTLSNTAMISRLPDKGAKLQKRLTELNSELARLGMEERTGADLDDFTSEFQRVLNV* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1131 1038 Coils Coil 998 1018 - -
Amo07g1131 1038 MobiDBLite consensus disorder prediction 924 942 - -
Amo07g1131 1038 MobiDBLite consensus disorder prediction 38 53 - -
Amo07g1131 1038 MobiDBLite consensus disorder prediction 249 282 - -
Amo07g1131 1038 Coils Coil 170 190 - -
Amo07g1131 1038 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 340 515 IPR014001 -
Amo07g1131 1038 SMART helicmild6 716 799 IPR001650 -
Amo07g1131 1038 Pfam Helicase conserved C-terminal domain 687 799 IPR001650 -
Amo07g1131 1038 Pfam SNF2-related domain 343 635 IPR000330 GO:0005524|GO:0140658
Amo07g1131 1038 MobiDBLite consensus disorder prediction 218 236 - -
Amo07g1131 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 882 IPR027417 -
Amo07g1131 1038 MobiDBLite consensus disorder prediction 214 237 - -
Amo07g1131 1038 CDD SF2_C_SNF 682 810 - -
Amo07g1131 1038 PANTHER SNF2/RAD54 FAMILY MEMBER 307 921 - -
Amo07g1131 1038 PANTHER OS04G0692700 PROTEIN 307 921 - -
Amo07g1131 1038 MobiDBLite consensus disorder prediction 945 962 - -
Amo07g1131 1038 Gene3D - 313 586 IPR038718 -
Amo07g1131 1038 MobiDBLite consensus disorder prediction 1 27 - -
Amo07g1131 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 565 IPR027417 -
Amo07g1131 1038 MobiDBLite consensus disorder prediction 1 108 - -
Amo07g1131 1038 SMART ultradead3 323 526 IPR014001 -
Amo07g1131 1038 Gene3D - 587 885 IPR027417 -
Amo07g1131 1038 MobiDBLite consensus disorder prediction 909 972 - -
Amo07g1131 1038 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 849 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1131 Amo-Chr7 23129840 23136237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1131 328 853 RAD5 or RAD16-like Gene Family AT1G02670 24.653 9.98e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo07g1131 SNF2_N 2.5e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1131 K20093 - gmx:100779283 1412.51