Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1079 ATGGCATCTTCTTCTGGTACCTTAGACACTACTTCTGCTTCCAATTCTTATACCAATAACTTCACTTTCTCAACACACCCATTCATGACCACTTCTTTCTCTGAACTCTTAGCTTCTTCCGCTGAAGACAAGCCTCGTGCTTCTGCTTCTGCTGTTGGTGTTCCTAAGTTCAAGTCTACACCACCACCATCTTTGCCTCTCTCTCCACCACCCATTTCTCCTTCTTCTTACTTCGCTATTCCTCCTGGTTTGAGCCCTGCTGAACTTCTTGATTCCCCTGTTCTTCTTAATCCTTCTAACATTTTGCCATCTCCAACAACGGGGGCATTTGTTGCACATAACTACAATAATTGGAAGAACAACAACAACAATTCTGGTGGGAACCAACAACAAGTTATCATCAAAGAGGAAGAAGGAAAGAACCACAATTTCTCAAACTTCTCTTTCCAAACCCAGCCATCTATGTTTCAATCCTCATCAACTGCCACAACTAAAACACAGCAGCAGCAGCCATGGGGATTTCAAGAATCCAACAAGAAACAGGAAAATTTCTCATCATCAAACACTGTGATGAAAACTGAGAACACTTGTTCCAACCAAAACAACAATGGGTTCCAATCAGATTACAACAGCAACAACAATTACCAGCCACAATCTCAGACTCTAAGCAGAAGATCAGATGATGGTTACAATTGGAGAAAATATGGTCAGAAACAAGTGAAAGGTAGTGAGAATCCAAGAAGTTACTATAAATGCACATTCCCAAATTGCCCAACAAAGAAGAAAGTTGAGAGATCCTTGGATGGACAAATCACAGAGATTGTTTATAAGGGTACTCATAATCACCCTAAGCCTCAGAATACTAGGAGAAACTCTTCATCTTCTTCTAATTCTGCTGCGTTTGCAATTGCTCCCTCCAATCAAATGAACAACTCTGAGGTGACTGATCATCAATCTTATACACATGGTAGTGGACAAATGGATTCTGTTGCCACCCCTGAGAACTCCTCAATTTCAGTTGGGGATGATGATTTTGAACAAAGCTCTCAGAGGTGTAAATCAGGTGGAGATGATTATGATGATGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGGGAAAATGAGGGAATATCAGGAGGTGGAAGTAGAACAGTGAGAGAACCAAGGGTTGTGGTTCAGACAACAAGTGACATAGATATCCTTGATGATGGCTACAGATGGAGGAAGTATGGCCAGAAAGTAGTTAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGCACACACCCAGGTTGTCCAGTGAGGAAGCATGTAGAGAGAGCCTCACATGACCTGAGGGCAGTGATAACAACCTATGAAGGCAAACACAACCATGATGTCCCCGCTGCCCGCGGCAGCGGAAGCCATGCCTCTGTCAACAGACCAATGCCAAACAACCACCACAACAATGCAAGCATTGCAATTAGGCCTTTACCATCAATGACACACCACAACAACAACAACACTAACAACGCTACTTCCCTTCAACAAGGGCCAGAAGGACAATCACCCTTCACACTTGAAATGCTTCAGAACCCTTCAAGCTATGGATTCTCATCTTCTGGGTTTGGGAATCCAATGGGTTCTTACATGCCTCAGCAGCAGCAACAACAGCAATCTGACAATGTGTTTTCTTCCAGAGCCAAGGAGGAACCTAGGGATGACATGTTCCTTGAATCTCTGCTATGCTGA 1734 0.4314 MASSSGTLDTTSASNSYTNNFTFSTHPFMTTSFSELLASSAEDKPRASASAVGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNPSNILPSPTTGAFVAHNYNNWKNNNNNSGGNQQQVIIKEEEGKNHNFSNFSFQTQPSMFQSSSTATTKTQQQQPWGFQESNKKQENFSSSNTVMKTENTCSNQNNNGFQSDYNSNNNYQPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSSSSNSAAFAIAPSNQMNNSEVTDHQSYTHGSGQMDSVATPENSSISVGDDDFEQSSQRCKSGGDDYDDDEPDAKRWKIEGENEGISGGGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHASVNRPMPNNHHNNASIAIRPLPSMTHHNNNNTNNATSLQQGPEGQSPFTLEMLQNPSSYGFSSSGFGNPMGSYMPQQQQQQQSDNVFSSRAKEEPRDDMFLESLLC* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1079 577 MobiDBLite consensus disorder prediction 154 230 - -
Amo07g1079 577 ProSiteProfiles WRKY domain profile. 227 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1079 577 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 551 IPR044810 GO:0003700
Amo07g1079 577 MobiDBLite consensus disorder prediction 276 385 - -
Amo07g1079 577 MobiDBLite consensus disorder prediction 346 374 - -
Amo07g1079 577 SMART WRKY_cls 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1079 577 SMART WRKY_cls 402 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1079 577 MobiDBLite consensus disorder prediction 492 559 - -
Amo07g1079 577 SUPERFAMILY WRKY DNA-binding domain 394 462 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo07g1079 577 MobiDBLite consensus disorder prediction 154 226 - -
Amo07g1079 577 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 41 551 - -
Amo07g1079 577 SUPERFAMILY WRKY DNA-binding domain 225 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo07g1079 577 MobiDBLite consensus disorder prediction 492 577 - -
Amo07g1079 577 MobiDBLite consensus disorder prediction 281 345 - -
Amo07g1079 577 MobiDBLite consensus disorder prediction 37 68 - -
Amo07g1079 577 Pfam WRKY DNA -binding domain 227 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1079 577 Pfam WRKY DNA -binding domain 403 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1079 577 ProSiteProfiles WRKY domain profile. 397 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1079 577 Gene3D WRKY domain 211 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo07g1079 577 Gene3D WRKY domain 389 455 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1079 Amo-Chr7 20564758 20569198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1079 47 576 WRKY Transcription Factor Family AT2G38470 48.155 6.46e-121 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo07g1079 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1079 K13424 - gmx:100127393 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0778 17 18326373 18329629 Amo07g1079 07 20564758 20569198 hybridization