Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1049 ATGCCAACCCAGAATTCCTACCATCTAAACCAGAAAAGGCTATGGAGATTTGTGGGATTTATGTCATGTGCCAATGGATTTCTGTGTTATGCTAAGAGTTCCTCTTTCAAACATCTATTTGGGGAGTGGAACTTGTTGAAGATCATTCTTTACACCCTGTTAAGTTTCAGCATCAGCACCATCATGCTATTTCCCAAAACATGCAGGCTTTCAAGGAGTTTCTTGCTTAAAGCTTATGTGGGTGTTCTGGTTTTGCTTCTAACCTCTCTCTACTCATTTTTCTCTGATAAATCTGACAATGGAAAACCAGACTTACTAAGCATGATTTCGAATGTTTCTTTCGCTTTGATGTCTTTGTCCCTGTCGAGGCAAATTGATCTTGGCTTTGAAGCAGAGCTTCTCAACTTCTTCCTTGGATGCCTAACTATTCAACTCATGAAGATCAGCTTGATGCTCTCCATCGTTGCAGCCATCTTTTGTTACTCTCTCACGATTCTTCGTTCCAAATCGGAATCTCAATCGCATGTGAGAACACTAAGAATGCAAGACCATGTAACAGTAGATATTGACGCTGAAAATGATGACTACTTAAATGCCTTCCAATGCAGTTACGACCATGGCAAAAAACAAATGCAGGATGATGGATACAGTTGGAGAAAATATGAAGAGAATCCATTGAGAAGAAGGGGAAATCAGATAAGCTTCTACAGATGCTCACACCCGAATTGCAAGGTTAAGAAGAAAGTAGAGAGAACAATAGATGGGGAAATTATTCATGTAAACTACAAAGGTACTCATGCCCACCGTAATTGCAAGCCTAAATTTCCTATAAAGAGGAACTCATCATCTGAATCTTTTTATTCACTTCTACCTTCAGAACCTTCCCATACTAAAATTATAGATCAATCATTGGCCTTCAATGGCGATGGACAACTGGATCATGATCCGGCACCAGAGAGCTCATCATTATCAATATGA 978 0.3957 MPTQNSYHLNQKRLWRFVGFMSCANGFLCYAKSSSFKHLFGEWNLLKIILYTLLSFSISTIMLFPKTCRLSRSFLLKAYVGVLVLLLTSLYSFFSDKSDNGKPDLLSMISNVSFALMSLSLSRQIDLGFEAELLNFFLGCLTIQLMKISLMLSIVAAIFCYSLTILRSKSESQSHVRTLRMQDHVTVDIDAENDDYLNAFQCSYDHGKKQMQDDGYSWRKYEENPLRRRGNQISFYRCSHPNCKVKKKVERTIDGEIIHVNYKGTHAHRNCKPKFPIKRNSSSESFYSLLPSEPSHTKIIDQSLAFNGDGQLDHDPAPESSSLSI* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1049 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 5 282 IPR044810 GO:0003700
Amo07g1049 325 MobiDBLite consensus disorder prediction 306 325 - -
Amo07g1049 325 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 5 282 - -
Amo07g1049 325 Gene3D WRKY domain 200 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo07g1049 325 Pfam WRKY DNA -binding domain 213 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1049 325 ProSiteProfiles WRKY domain profile. 207 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1049 325 SUPERFAMILY WRKY DNA-binding domain 209 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo07g1049 325 SMART WRKY_cls 212 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1049 Amo-Chr7 19675085 19676072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1049 213 268 WRKY Transcription Factor Family AT3G01080 53.571 2.85e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo07g1049 WRKY 7.1e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1049 - - ccaj:109792596 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0800 17 18900328 18904295 Amo07g1049 07 19675085 19676072 hybridization