Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0871 ATGCCAGAGATCGAACAGGCGCCGCCGCATGCGGCGTCGGCAACTAGTAACACCTCCACATCCACCGTCACCACCTCCGCCTTATTTGGAAAATACGAGCTAGGAAGACTCCTAGGATGCGGCGCGTTCGCGAAGGTTTACTACGCGCGGAACGTGAAAACGATGCAGAGCGTGGCGATAAAGGTGATAAGCAAGAAGAAGATAATGGGAACGTCACTGGTTTCGAACGTGAAGCGCGAGGTTTCGATCATGAGCAAGCTCAACCACCCGAACATCGTGAAGCTGCACGAGGTGCTGGCGACGAAGACCAAGATCTATTTCGTGTTGGAGTTCGTTAAAGGCGGTGAGTTATTTGCTAAGGTTTCGAAAGGGAGGTTCAGCGAGGATCTCGCCCGCAAGTATTTCCAGCAGCTTATCTCCGCCGTAGGGTACTGCCACTCGCGCGGCGTTTTCCACCGTGATTTGAAGCCGGAGAATCTCTTGCTTGATGAAAATGGGAATCTCAAGGTCTCCGATTTTGGACTCAGTGCCGTCAAAGACCAGGTGAGGTTTGATGGGTTGTTGCACACGTTGTGTGGCACTCCGGCTTACGTGGCACCGGAGATTCTGGCAAAGAAGGGCTACGACGGTGCAAAGGTTGATGTATGGTCTTGTGGGGTGATTCTCTTTGTTCTTGCAGCAGGGTACCTACCTTTCAATGATCCAAACTTGATGGTGATGTACAAGAAGATCTACAAGGGGGAGTACCGGTGTCCACGGTGGATGTCGCCGGATCTACGACGGTTCCTTTCAAGGGTTCTTGACATCAACCCCGAGACAAGGTTCACCGTTGATGAGATCACCAGGGACCCTTGGTTTAGAAAAGGCTACAAGGAGATCAAGTTTCATGAGGATTGGAATCTTGGGTCTGAGGACAAGGTGAAGGAATTGAATGCTTTTGATATAATCTCATTCTCTTCTGGTTTGAATCTTTCTGGATTGTTTGTTGGTGGTGGCGCCTCCACATCAGCGGCCGCAGAGGACACCGAGAGGCTCATGCTCAACGGTTCAGTTGAGGCGGTTTTGGCTAGGGTGGAGGAGGTGGCTGTGGCAGAGGGGCTTATAGTAAGAGGGTTGAAAGAATGTGGTGTGGAGCTAGAGGGGCAAAATAGTAATTTCGGACTTGTGGTGGAGGTTTGCCGGGTAACTGCCAACCTGGTTGTGGTGGAGGCAACGAGGAAAACCGGGGATCTCTTCGGATTTAGGGATATGTGGAGGAACAAACTGACACCTAAGCTGTTAAGTAATGCTACCACAGAAAGTGATAGCATTTCTGATTCAGCAGAGACTCAATCGGAGATTTCCGAGTCTGAGCAAGTTGCTAGTGTCTGA 1371 0.5077 MPEIEQAPPHAASATSNTSTSTVTTSALFGKYELGRLLGCGAFAKVYYARNVKTMQSVAIKVISKKKIMGTSLVSNVKREVSIMSKLNHPNIVKLHEVLATKTKIYFVLEFVKGGELFAKVSKGRFSEDLARKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQVRFDGLLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVILFVLAAGYLPFNDPNLMVMYKKIYKGEYRCPRWMSPDLRRFLSRVLDINPETRFTVDEITRDPWFRKGYKEIKFHEDWNLGSEDKVKELNAFDIISFSSGLNLSGLFVGGGASTSAAAEDTERLMLNGSVEAVLARVEEVAVAEGLIVRGLKECGVELEGQNSNFGLVVEVCRVTANLVVVEATRKTGDLFGFRDMWRNKLTPKLLSNATTESDSISDSAETQSEISESEQVASV* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0871 456 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Amo07g0871 456 ProSiteProfiles Protein kinase domain profile. 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0871 456 PANTHER - 1 452 - -
Amo07g0871 456 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Amo07g0871 456 Gene3D Transferase(Phosphotransferase) domain 1 112 293 - -
Amo07g0871 456 Gene3D Phosphorylase Kinase; domain 1 21 111 - -
Amo07g0871 456 SMART serkin_6 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0871 456 MobiDBLite consensus disorder prediction 429 456 - -
Amo07g0871 456 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 452 - -
Amo07g0871 456 SUPERFAMILY Protein kinase-like (PK-like) 29 297 IPR011009 -
Amo07g0871 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Amo07g0871 456 CDD CIPK_C 311 426 - -
Amo07g0871 456 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0871 456 Pfam NAF domain 308 370 IPR004041 GO:0007165
Amo07g0871 456 Gene3D Kinase associated domain 1, KA1 306 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0871 Amo-Chr7 15897429 15900585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0871 1 427 CBL-interacting serine-threonine protein kinases AT2G30360 63.616 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo07g0871 Pkinase 2.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0871 - K12761 tcc:18591074 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0699 17 16130012 16133159 Amo07g0871 07 15897429 15900585 hybridization
Amo11g0091 11 1176178 1179657 Amo07g0871 07 15897429 15900585 PCT
Amo07g0871 07 15897429 15900585 Amo11g0091 11 1176178 1179657 PCT