Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0865 ATGGACATATCTTTGTTAAATGTGCTCTCCAATGGCATATCCTCATTTTTGCATCCATCATTTTCTGGAAACATGAACTCAAAACCTGTATCAATGTATTGCCAAAGTGCAGAGCAGACACTTAAGTTGTTGAAGCCAATTATCGATACAAGTGTTCATTCTGATATATCTGCTGATGAAGAGCTTAGAAAGTTATTTGAGGAACTTGGTCAGTCTGTTGATGAGATGAGGGAGCTTTTCGAGAATTGGCATCCGCTATCCAGTAAAATTTACTTTGTGATGCAAGCTGAACCGTTGATAGCTAGAGTTCAGTCTATAGGGTTCAATATTTTGCAGAAGCTGAAGGCTTCACAGCAATGTCTACCTGATGATTTGGGGCATGATATGACATCAATCATTAAGGAAGCTATAAATGAACAACTGGAAGGCAAAGGACCAAGTTCTGAGATTCTAGCAAATATTGCTGAGATCCTCGACTTAAGGTCTAATCAAGATGTTTTGATTGAAGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAACATTGCAGAAGCTGAGTATATTGATCGAATGATCTCTGTTGTGACTCGAATGCATGAGCGAATCATCATTCTCAAGCAAGCTCAGAGCTCTATCCCGGATTCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGTCATCCGGGCAAACCTATGAGCGAACTTTCATCAAGGACTGGATTGATCTTGGGCTCATGGTTTGTCCAAAGACTCGTCAGACTCTGGTTCATTCCAACCTAATACCTAACTACACTGTAAAAGCATTAATTGTTAATTGGTGCGAAACAAACAATGTGATACTAGTTGATCCAGTAAAATCCACAAACATAAATCAACTATCTCTCCTTCATGGATCTATTGAGTCTGATTCAACCGAGGAATCAACTGTTAGAACTTCTTTCAGTGCAAACCACCAAGCGGAAACATCACTATTGCATCCTAGTTCAACTCCAGAAGATTCCTTTAGTGGCGTGGATAATGCACAGCATGTGGATCCTGTAAGAATATCATCTGCAGTTTCAGATGATAGGTCTGCTAGCTCGGACGAAGAAAGTGTGGATTTAGTTTCGCAATCATCAACTTCACCATCTAGAAGGGAAGCTTCAAATGCCTTGAGATCAGAGCAATCTCAAAACCATGTAAGAACTTATTCTGAGTCCAGTGAACACTCTAGTGAAAATTTTCATCAAGGCATACAGGGTGATAGCAACAATGGTCCTCTTCCATCATCAACCAGTCCAATCCACAGTCGAGATGCTTCTGAGGAATTAGCTCCCGAGCTGGATGCTGCTGCCAGGCCAATTCCACAAGGTGAGCCCGAGTTTTCACCACAACTGGTGCAGCCAAGGTTTCCAAGAAAAACTGTATTACAACGGCCGTCAGAGAGGTTTGTCCCTAGGATAGTTTCTTCTCCTCCTGTTGAACCAAGAGGCGATGGATCCGTTATTGAATCCAGGGTTAAGGAGTTGATTGAGCTCTTGAAGAGCTCTTCTCTTGATACTCAAAGGGAAGCCACAGGAGAACTCCGCCTTCTTGCCAAGCACAACATGGATAACAGAATTGTGATTGCAAACTGTGGAGCCATTCCCTTGTTGGTCAATTTGCTTCTATCAACCGATACAACAATCCAAGAAAACTCTGTTACAGCACTTCTTAACTTATCAATCAATGACAACAACAAAAATGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTCCTTGAGACAGGTAGTGAAGAAGCAAAGGAGAACTCGGCGGCTACTCTTTACAGCTTATCAGTGGTTGAGGAGAACAAGATCAGGATAGGGAGGGCCGGGGCTATTAAACCTCTGGTTGAGTTATTAAGTAATGGAACTCCAAGGGGTAAGAAAGATGCTTCCACTGCTTTATTTAACTTGTCAATATTTCACGAAAACAAGGATCGAATTGTAGAAGCTGGTGCTGTGAAGCACCTTGTAGATTTGATGGACCCTGCAGCCGGAATGGTCGATAAGGCTGTGGCTGTTCTAGCAAATCTGGCCACAATACCGGAAGGAAGAACTGCCATTGGGCAGCAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATTTATGCGTAAACCATCCGAGATATTTAAACATGGTACTCCAAGAAGGAGCTGTTCCACCATTAGTCGCTTTATCAAGATCAGGCACCGCAAGGGCTAAAGAGAAGGCCCTGTCTCTTCTGAATCATTTTAGAGATCGAAGGCATGGTGGTGCTGTGAGGGGCTGA 2391 0.4291 MDISLLNVLSNGISSFLHPSFSGNMNSKPVSMYCQSAEQTLKLLKPIIDTSVHSDISADEELRKLFEELGQSVDEMRELFENWHPLSSKIYFVMQAEPLIARVQSIGFNILQKLKASQQCLPDDLGHDMTSIIKEAINEQLEGKGPSSEILANIAEILDLRSNQDVLIEAVALERLKENAEQTENIAEAEYIDRMISVVTRMHERIIILKQAQSSIPDSVPADFCCPLSLELMTDPVIVSSGQTYERTFIKDWIDLGLMVCPKTRQTLVHSNLIPNYTVKALIVNWCETNNVILVDPVKSTNINQLSLLHGSIESDSTEESTVRTSFSANHQAETSLLHPSSTPEDSFSGVDNAQHVDPVRISSAVSDDRSASSDEESVDLVSQSSTSPSRREASNALRSEQSQNHVRTYSESSEHSSENFHQGIQGDSNNGPLPSSTSPIHSRDASEELAPELDAAARPIPQGEPEFSPQLVQPRFPRKTVLQRPSERFVPRIVSSPPVEPRGDGSVIESRVKELIELLKSSSLDTQREATGELRLLAKHNMDNRIVIANCGAIPLLVNLLLSTDTTIQENSVTALLNLSINDNNKNAIANAGAIEPLIHVLETGSEEAKENSAATLYSLSVVEENKIRIGRAGAIKPLVELLSNGTPRGKKDASTALFNLSIFHENKDRIVEAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPEGRTAIGQQGGIPLLVEVVELGSTRGKENAAAALLHLCVNHPRYLNMVLQEGAVPPLVALSRSGTARAKEKALSLLNHFRDRRHGGAVRG* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0865 796 MobiDBLite consensus disorder prediction 314 350 - -
Amo07g0865 796 MobiDBLite consensus disorder prediction 377 444 - -
Amo07g0865 796 MobiDBLite consensus disorder prediction 314 449 - -
Amo07g0865 796 SMART arm_5 542 582 IPR000225 GO:0005515
Amo07g0865 796 SMART arm_5 624 664 IPR000225 GO:0005515
Amo07g0865 796 SMART arm_5 583 623 IPR000225 GO:0005515
Amo07g0865 796 SMART arm_5 746 787 IPR000225 GO:0005515
Amo07g0865 796 SMART arm_5 501 540 IPR000225 GO:0005515
Amo07g0865 796 SMART arm_5 705 745 IPR000225 GO:0005515
Amo07g0865 796 SMART arm_5 665 704 IPR000225 GO:0005515
Amo07g0865 796 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Amo07g0865 796 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Amo07g0865 796 Coils Coil 163 193 - -
Amo07g0865 796 SUPERFAMILY RING/U-box 210 297 - -
Amo07g0865 796 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Amo07g0865 796 Gene3D - 505 791 IPR011989 -
Amo07g0865 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 594 636 IPR000225 GO:0005515
Amo07g0865 796 PANTHER U BOX DOMAIN-CONTAINING 8 318 - -
Amo07g0865 796 PANTHER U BOX DOMAIN-CONTAINING 465 791 - -
Amo07g0865 796 CDD RING-Ubox_PUB 224 266 IPR045210 -
Amo07g0865 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 553 IPR000225 GO:0005515
Amo07g0865 796 SUPERFAMILY ARM repeat 513 785 IPR016024 -
Amo07g0865 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 595 IPR000225 GO:0005515
Amo07g0865 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 295 IPR013083 -
Amo07g0865 796 Pfam Armadillo/beta-catenin-like repeat 583 622 IPR000225 GO:0005515
Amo07g0865 796 Pfam Armadillo/beta-catenin-like repeat 626 663 IPR000225 GO:0005515
Amo07g0865 796 Pfam Armadillo/beta-catenin-like repeat 544 581 IPR000225 GO:0005515
Amo07g0865 796 Pfam Armadillo/beta-catenin-like repeat 667 703 IPR000225 GO:0005515
Amo07g0865 796 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 465 791 - -
Amo07g0865 796 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 318 - -
Amo07g0865 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 717 IPR000225 GO:0005515
Amo07g0865 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 635 677 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0865 Amo-Chr7 15695780 15700001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0865 180 796 U-box Gene Family AT2G23140 59.752 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0865 - - adu:107458158 1496.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0712 17 16452403 16455668 Amo07g0865 07 15695780 15700001 hybridization
Amo11g0096 11 1231055 1238052 Amo07g0865 07 15695780 15700001 PCT
Amo07g0865 07 15695780 15700001 Amo11g0096 11 1231055 1238052 PCT