Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0828 ATGCTTAAAGCTCAATGCCACATATGGAATCATATGTATAGTTTTGTGAACACTGTTTCCCTTAAATGTGCCGTTGACTTAGACATATTTGAAACCATACACAAACATGGAAAACCCATGTCACTCTCACAACTCATTGCTTCATTGCAAATTCACCCTTCAAAAACCACCTTCATCCATCGCTTGATAAGAATCTTGACACATTCCGACTTCTTCGCAACGACAAATGTGGCCGATAACAATAATGAGATCGAAATTGGGTATGTTCTAACTGATTCGTCTATGTTGTTACTTAAGGAACACCCCTTAAGTATAAGGACTTTCTTTGTTAACTCGCTTGATCCAATTTTGACAAATCCATGGAACAAGTTGTCAACATGGTACAAAAATGAAGATCCTACGCCGTTTGAAACAGAGCATGGGATAATGGTATGGGAGTATGGTGGGCGTGAACCTAGGCTCAATCATTTGATCAATGATGCCATGGCAAGTGATGCTAGATTCATTAGCGAAATGGTGATTGAGAAGTGCAAAGGTGTGTTTGAGGGATTGGAATCATTGGTTGATGTTGGTGGAGGCAATGGAACTCTTGCAAAGGCCATTGCCAAATCATTCCCACAGTTGGAGTGCACTGTGCTTGATCAACCACATGTTGTTGCTGACTTGGAAGGAAGTGACAACCTTAAATATGTTGGAGGGAACATGTTTGAGGCCATTCCTCCTGCTGATGCTGTTTTGATGAAGGGGATTTTGCATGACTGGAATGATAAAGAATGCATTAACATATTGAAGAAAAGCAATGAAGCAATTTTGAGCAAAGGCAAAGAAGGGAAATTGATCATTATAGACATGGTAGTTCAGGAAGATGAGAAGAAAGATCCTGAATTAGTGGAAACACAACTCTTCTTTGACTTGCTCATGTTGGTTATGGCTGCCGGAAAGGAGAGAAGTGAAAAAGAATGGGCCAAGTTGTTCTTCTCTGCCGGATTCAGTGACTATAAGATAATTCCAGTTTTAGGTATGAGGTCTGTTATTGAGGTCTACCCATAA 1050 0.4019 MLKAQCHIWNHMYSFVNTVSLKCAVDLDIFETIHKHGKPMSLSQLIASLQIHPSKTTFIHRLIRILTHSDFFATTNVADNNNEIEIGYVLTDSSMLLLKEHPLSIRTFFVNSLDPILTNPWNKLSTWYKNEDPTPFETEHGIMVWEYGGREPRLNHLINDAMASDARFISEMVIEKCKGVFEGLESLVDVGGGNGTLAKAIAKSFPQLECTVLDQPHVVADLEGSDNLKYVGGNMFEAIPPADAVLMKGILHDWNDKECINILKKSNEAILSKGKEGKLIIIDMVVQEDEKKDPELVETQLFFDLLMLVMAAGKERSEKEWAKLFFSAGFSDYKIIPVLGMRSVIEVYP* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0828 349 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 9 349 IPR016461 GO:0008168
Amo07g0828 349 PIRSF O-mtase 1 349 IPR016461 GO:0008168
Amo07g0828 349 PANTHER O-METHYLTRANSFERASE 1 349 - -
Amo07g0828 349 Pfam Dimerisation domain 20 67 IPR012967 GO:0046983
Amo07g0828 349 Gene3D - 1 97 IPR036388 -
Amo07g0828 349 PANTHER O-METHYLTRANSFERASE 1 349 IPR016461 GO:0008168
Amo07g0828 349 Pfam O-methyltransferase domain 121 331 IPR001077 GO:0008171
Amo07g0828 349 Gene3D Vaccinia Virus protein VP39 98 349 IPR029063 -
Amo07g0828 349 SUPERFAMILY "Winged helix" DNA-binding domain 2 102 IPR036390 -
Amo07g0828 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 103 348 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0828 Amo-Chr7 13284137 13286689 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0828 19 336 Monolignol Biosynthesis Gene Families AT5G54160 32.722 8.41e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0828 - - aip:107606886 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0758 17 17716800 17719442 Amo07g0828 07 13284137 13286689 hybridization