Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0793 ATGGCTGCTGTTAGGTTTTCCCATTTAAAACGCCTCCAGAGTTCAATCAAGGGTTCTCTGAATGTTGAACTGTGTCACAATAGTGTGGATATGAATCTTGCAAGAAGTGCAAGGTTGCCTAGTGATTCACTTAGCAATGTTTATTACAAAAGGGAGTTACAGTCACCTCGAATTTTCACGAAGAATCAGTTTAGGAGTATTCCTTCTGAATGTCATGCAAGTAGTTCCCCTGTTATTACTAAACACAATGCATTAGTTTATCCTGGGTTGTCGCCTAGCTTTCGAATCCGGGGTGCTCTTCCTTTTGCTTCAATGAGCCCTGGGTTGAATTGCCGGACATTTTCGTCGGTTTTGGGTGGCAAAGGAAGCAGGGATCATAATGGCACAGAAATTGCTGCTGGTGCTGGTGATGATTCTGTTGTTGCTGGTGATCTAGCTGAGAAGGTGAAAGATACATGGAAGAGTGTGGTAGAGACAGCAACACATGCTGGAGAAAAGGTTAAAGAAGCCTCGGATGAGCTGACTCCGTATGCTCAACAGTTGCTTGATTCACATCCGTATCTTAACAAGGTGGTTATTCCAGTTGGTAGTACATTAACTGCTACTCTAGTAGCTTGGTTTTTGATGCCTTGGATTTTGAGGAAATTTCACAAATATGCAATGAAAGGCCCAATTTCTCTAATACCTGGAAGCACATCATGGGAACAAGTTACTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTAGTTACCTTCATCACATTATCACAGATTGGTGCAATGGTAGCTCCAACAACTATAACTTCACAATATCTTGTGCCGGCTTGGAGGGGTGCAGCGATTATTTCGTTTGTATGGTTTTTGCATAGATGGAAGACAAATGTTTTTCATCGTACCCTGTCCAATCAAGGTTTACTTGGACTTGACAGGGAGAAATTGCTCACTCTAGATAGAATCTCATCTGTTGGTCTGTTTATGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTATCGGAGGAGTTGCTACTGCTTTTGCTGCAAGAGATATCCTTGGCAATGTTTTCAGTGGTTTATCTATGCAGTTTTCCAGGCCCTTTTCAATAGGAGATACAATAAAAGCTGGCTCAGTTGAGGGTCAAGTGGTGGAAATGGGCCTTACTACAACATCGTTGCTGAGTACTGAGAAGTTTCCAGTCATAGTGCCGAATTCCTTTTTTTCTAGCCAGGTTATAGTGAACAAATCTCGTGCTGAGTGTCGTGGCATCATCAGCAAAATCCCTTTGCAAATTGAGGATTTAAGTAAGATTCCCCAGTTATCTGAGGATATAAAAAGCATGCTAAGATCACATGCAAAGGTGTTCTTGGGAAAAGAGGTTCCTTACTGTTTCTTGTCAAGAGTGGAAAGTTCATATGCAGAATTGACTATTGGATACAACCTCAAACACATGAACTTGTTCACTAGATCTTCCCAATTGTTGATGCTATCTCTTGGAAATGACTCCAACCATTGA 1560 0.4179 MAAVRFSHLKRLQSSIKGSLNVELCHNSVDMNLARSARLPSDSLSNVYYKRELQSPRIFTKNQFRSIPSECHASSSPVITKHNALVYPGLSPSFRIRGALPFASMSPGLNCRTFSSVLGGKGSRDHNGTEIAAGAGDDSVVAGDLAEKVKDTWKSVVETATHAGEKVKEASDELTPYAQQLLDSHPYLNKVVIPVGSTLTATLVAWFLMPWILRKFHKYAMKGPISLIPGSTSWEQVTYEKSFWGAMEDPVRYLVTFITLSQIGAMVAPTTITSQYLVPAWRGAAIISFVWFLHRWKTNVFHRTLSNQGLLGLDREKLLTLDRISSVGLFMIGIMALAEACGVAVQSIVTVGGIGGVATAFAARDILGNVFSGLSMQFSRPFSIGDTIKAGSVEGQVVEMGLTTTSLLSTEKFPVIVPNSFFSSQVIVNKSRAECRGIISKIPLQIEDLSKIPQLSEDIKSMLRSHAKVFLGKEVPYCFLSRVESSYAELTIGYNLKHMNLFTRSSQLLMLSLGNDSNH* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0793 519 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 279 364 IPR011014 GO:0016020
Amo07g0793 519 Pfam Mechanosensitive ion channel 324 497 IPR006685 GO:0016020|GO:0055085
Amo07g0793 519 Gene3D - 381 429 IPR023408 -
Amo07g0793 519 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 115 507 - -
Amo07g0793 519 SUPERFAMILY Sm-like ribonucleoproteins 365 430 IPR010920 -
Amo07g0793 519 Gene3D - 280 380 - -
Amo07g0793 519 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 115 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0793 Amo-Chr7 12187240 12191271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0793 65 510 Mechanosensitive Ion Channel Family AT4G00290 58.333 9.88e-180 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0793 K22047 - gmx:100814954 691.419