Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0788 ATGGAATCTTTGGATGCCACCATTTCTTCTAATTCACCATCTTCAATATTATCATCTTCTAGTGGTGTGAATAATAATGATAATATTAGTAGTGTAAGTAATGATAACAATGTTAATAGTAATAGTAATGGTGGAACTGTGACATGGTATGGTGTGAGGCTACCATCTGTTAGCCCTTTACGTTCCCCACTTTCCTTTCTCTTGGATTACTCTGGCATTCTAAGATCAAGCCATGATTCTGAGAGTTTGGTTGTGAACAATGGTGTTACGGGTCTAGAATTGCGGTCTGAGCCTCGGATTCAGTCACCTGATGATGCTGGTGGTGTTGCTTCTGGGACACCCTGCAACAACGGTGCTGCTGGGGAGGTTGCAATAAGGATCATTGGTGCTGGAGAGCATGATCACAATGTGGGGTTAGGTTCGTCTATTCCCTCATCGTCAAGGAGTCAGATTGGAGAAGCGGGGTATGATGGTTGTGATGAGATGATTGGTGATAGAGGGGGAATTGATGATGATGCCGAGGGTCGTCGCAATGGAGTTCCGGTCAGCGAGAGGGTGCCTCTGGTGTCTCCAGCTTCTTCTTCGTCTTTGGCTGGTGGTAGTGGGCAGGCTGATGGCGATGTGGGGAATGGTGTAGATAGTAACAATAGGGATTCCTCAAACTACCAGCGATATGACATTCAGCGGATTGCAAAGTGGATTGAGCAGATTCTTCCTTTCTCACTCTTGTTACTGGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTAAAGGGGGATAGGAAAGTGTCAGTTCTTGTTGGTATATCTATTGCCTTCATGCTTCATGTGATGTTCATTTATTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGTGTTGGTTCCCCCGAAAGCAAATCCTTTCTGGCATGCAATATTCATCATCCTAGTTAATGATGCATTGGTGCGGCAAGCAGCAATGGCCTTCAAGTGTATTCTGTTAATATATTACAAAAGTGGCAGAGGTCATAGCTTCCGTCGGCAGGCTCAAATGTTAACGCTGGTTGAGTACACACTGCTATTGTATCGTGCCTTATTACCAACACCTGTTTGGTACCGGTTTTTCTTAAACAGGGCATACGGCAGTCTCTTTTCATCCCTGACCACAGGGTTATATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAATGCTTTTTATCTGCCTTGAAAGCATTGTCAAGAAAGGAAGTTCATTATGGGGTTAATGCCACAATGGAGCAGGTTAATGCTGCTGGTGACTTATGCGCCATATGCCAGGAGAAAATGCATGCCCCCATATTGTTGCGCTGCAAACACATTTTCTGCGAGGAGTGTGTGTCAGAATGGTTTGAGAGAGAAAGGACATGCCCTCTATGCAGAGCACTGGTAAAGCCTGCTGATCTGCGTACCTTCGGAGACGGATCAACGAGTCTCTTTTTCCAGTTGTTCTAG 1548 0.4419 MESLDATISSNSPSSILSSSSGVNNNDNISSVSNDNNVNSNSNGGTVTWYGVRLPSVSPLRSPLSFLLDYSGILRSSHDSESLVVNNGVTGLELRSEPRIQSPDDAGGVASGTPCNNGAAGEVAIRIIGAGEHDHNVGLGSSIPSSSRSQIGEAGYDGCDEMIGDRGGIDDDAEGRRNGVPVSERVPLVSPASSSSLAGGSGQADGDVGNGVDSNNRDSSNYQRYDIQRIAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISIAFMLHVMFIYWWYRNDDLLYPLVLVPPKANPFWHAIFIILVNDALVRQAAMAFKCILLIYYKSGRGHSFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNRAYGSLFSSLTTGLYLTFKLTSVVEKVQCFLSALKALSRKEVHYGVNATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0788 515 MobiDBLite consensus disorder prediction 165 217 - -
Amo07g0788 515 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 20 515 IPR044235 GO:0061630|GO:1904294
Amo07g0788 515 MobiDBLite consensus disorder prediction 165 179 - -
Amo07g0788 515 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 20 515 - -
Amo07g0788 515 ProSiteProfiles Zinc finger RING-type profile. 454 492 IPR001841 -
Amo07g0788 515 ProSitePatterns Zinc finger RING-type signature. 469 478 IPR017907 -
Amo07g0788 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 502 IPR013083 -
Amo07g0788 515 CDD RING-HC_RNFT1_like 453 492 - -
Amo07g0788 515 Pfam Zinc finger, C3HC4 type (RING finger) 452 495 - -
Amo07g0788 515 SUPERFAMILY RING/U-box 445 497 - -
Amo07g0788 515 SMART ring_2 454 491 IPR001841 -
Amo07g0788 515 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0788 Amo-Chr7 11745156 11758010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0788 60 515 C3H Transcription Factor Family AT5G01960 61.171 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0788 - K22379 gmx:100784614 600.897