Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0681 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGGATAAAGAGCAGCAGGAGTAACAGAGAAAGAGGTAGAGGACGTGGCAGAGCCCGAGCTCACACTGGCCGTGGGACAGGCAGGAATCCTGGTGTTGGTGGAAGAATAACTGGTGCTGCTCGTAGAGGTCTTAATACCCGGCCGTCATCCTATGCCATTGCCAAGTCCATCCGGAGGACCGGGCCTTTTCCTTGGCAGCAAGATTTGTTTGAGGATAGCATAAGAGCTGCAGGGATACAAGGGGTTGAAGTTGGTACAAAGTTGTACATTTCAAATTTGGACCATGGAGTAACCAATGAAGACATAAGGGAGCTTTTTTCTGAGATTGGAGACTTGAAGCGCTGTGTTGTTCATTATGATAAAACTGGACATCCAAGTGGTTCTGCTGAAGTTGTCTATACAAGAAGAAGTGATGCATTTTCTGCTCTTAAACGATACAATAATGTGCTTCTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAACGCAGAATTGCCTATAACTGCTCGGGTAAATGTATCGGGGGTAAATGGGCGAAGGAAGAAAAGGACAGTTGTGATGATGTCTCGTGGAGGTCAAACTGGAGGTGGTGCTGGGCTCAGTCGCGCTGCCACTCGGGTACAACGTAGTGGGGCAAGGCCAAAGGGTGGAACTTCAAGTGGCCGAGGCCGTGTTCGCAGCCGTGGACGTGGCAGGGTTGGACGCCAAGGGCGTGGGAAAAAGGAGAAGTCAGCTGAGGAACTTGACAAGGAGCTGGAAACCTACCATGCTGAGGCTATGAACATCTCGTAG 831 0.4946 MASSLDMSLDDRIKSSRSNRERGRGRGRARAHTGRGTGRNPGVGGRITGAARRGLNTRPSSYAIAKSIRRTGPFPWQQDLFEDSIRAAGIQGVEVGTKLYISNLDHGVTNEDIRELFSEIGDLKRCVVHYDKTGHPSGSAEVVYTRRSDAFSALKRYNNVLLDGKPMKIEIVGANAELPITARVNVSGVNGRRKKRTVVMMSRGGQTGGGAGLSRAATRVQRSGARPKGGTSSGRGRVRSRGRGRVGRQGRGKKEKSAEELDKELETYHAEAMNIS* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0681 276 MobiDBLite consensus disorder prediction 1 52 - -
Amo07g0681 276 MobiDBLite consensus disorder prediction 201 276 - -
Amo07g0681 276 CDD RRM_THOC4 97 171 - -
Amo07g0681 276 SUPERFAMILY RNA-binding domain, RBD 96 193 IPR035979 GO:0003676
Amo07g0681 276 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 275 - -
Amo07g0681 276 Coils Coil 251 271 - -
Amo07g0681 276 SMART FoP_duplication_2 203 276 IPR025715 -
Amo07g0681 276 Gene3D - 92 173 IPR012677 -
Amo07g0681 276 SMART rrm1_1 98 170 IPR000504 GO:0003723
Amo07g0681 276 Pfam C-terminal duplication domain of Friend of PRMT1 215 270 IPR025715 -
Amo07g0681 276 PANTHER THO COMPLEX SUBUNIT 4C 1 275 - -
Amo07g0681 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 174 IPR000504 GO:0003723
Amo07g0681 276 MobiDBLite consensus disorder prediction 251 269 - -
Amo07g0681 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0681 Amo-Chr7 8858192 8863318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0681 96 171 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 4.90e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0681 K12881 - gmx:100820344 346.665