Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0634 ATGACCCATTGCTCTCCCTCCATAAATACCAACACTCTCCACACTCTTCCCTCCTCACACAAACACAACCCTTTGGCCTTCTCTTTCTCTGTCCAAAACACTGAAACTCGCATAAAGAGAGAAGAAACCATGTCCACCAAAATCATCAGCATTGCAACACTTTTACTAGCTCTCTTCACAACAACACAAGCCAGAATCCCCGGTGTCTACACTGGCTCCGCATGGGAGACTGCTCACGCCACATTCTACGGTGGCAGCGACGCCTCCGGAACAATGGGAGGGGCATGTGGTTATGGAAACTTGTACAGCCAAGGGTACGGTGTGAACACGGCGGCGTTGAGCACTGCACTGTTCAACAATGGCTTCAGCTGCGGAGCGTGTTTCGAGATCAAATGCGCCAACGACCCCAACTGGTGCCATGCGGGTTCGCCATCGATATTCGTGACGGCAACTAACTTCTGCCCTCCCAACTACGCTCTCCCAAGTGACAATGGGGGTTGGTGCAACCCTCCAAGGCCACACTTCGATCTCGCCATGCCCGTGTTCCTCAAGATCGCTCAGTACCGCGCTGGTATTGTTCCCGTCTCTTACCGCAGGGTTCCATGCCGCAAGCAAGGTGGGATGAGATTCACGATCAACGGTTTCCGTTACTTCAACTTGGTTTTGATCACGAACGTGGCAGGTGCAGGGGATATCATGAGGGCGAGTGTGAAGGGTTCCAATACAGGGTGGATGACCATGAGCCGTAACTGGGGTCAAAACTGGCAATCAAACTCTGTTTTGGTTGGTCAGTCACTCTCCTTCAGGGTCACAGCCAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCACCCTCCAATTGGCAATTTGGCCAAACCTTCACCGGCAAAAACTTTAGGGTCTAG 906 0.5232 MTHCSPSINTNTLHTLPSSHKHNPLAFSFSVQNTETRIKREETMSTKIISIATLLLALFTTTQARIPGVYTGSAWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPNWCHAGSPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIMRASVKGSNTGWMTMSRNWGQNWQSNSVLVGQSLSFRVTASDRRTSTSWNIAPSNWQFGQTFTGKNFRV* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0634 301 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 217 296 IPR007117 -
Amo07g0634 301 SMART dpbb_1 110 197 IPR007112 -
Amo07g0634 301 PRINTS Expansin signature 253 274 IPR002963 GO:0009664
Amo07g0634 301 PRINTS Expansin signature 132 143 IPR002963 GO:0009664
Amo07g0634 301 PRINTS Expansin signature 105 119 IPR002963 GO:0009664
Amo07g0634 301 PRINTS Expansin signature 146 156 IPR002963 GO:0009664
Amo07g0634 301 PRINTS Expansin signature 165 182 IPR002963 GO:0009664
Amo07g0634 301 PRINTS Expansin signature 282 298 IPR002963 GO:0009664
Amo07g0634 301 PRINTS Expansin signature 182 195 IPR002963 GO:0009664
Amo07g0634 301 PRINTS Expansin signature 206 218 IPR002963 GO:0009664
Amo07g0634 301 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Amo07g0634 301 Pfam Expansin C-terminal domain 208 285 IPR007117 -
Amo07g0634 301 PANTHER EXPANSIN-A4 51 300 - -
Amo07g0634 301 SUPERFAMILY PHL pollen allergen 204 296 IPR036749 -
Amo07g0634 301 Gene3D - 61 203 IPR036908 -
Amo07g0634 301 Gene3D - 208 299 IPR036749 -
Amo07g0634 301 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 93 207 IPR007112 -
Amo07g0634 301 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Amo07g0634 301 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Amo07g0634 301 PRINTS Expansin/Lol pI family signature 282 296 IPR007118 GO:0005576
Amo07g0634 301 PRINTS Expansin/Lol pI family signature 114 132 IPR007118 GO:0005576
Amo07g0634 301 PRINTS Expansin/Lol pI family signature 190 206 IPR007118 GO:0005576
Amo07g0634 301 PRINTS Expansin/Lol pI family signature 74 89 IPR007118 GO:0005576
Amo07g0634 301 Pfam Lytic transglycolase 110 197 IPR009009 -
Amo07g0634 301 PANTHER EXPANSIN-A15 51 300 IPR002963 GO:0009664
Amo07g0634 301 SUPERFAMILY Barwin-like endoglucanases 74 225 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0634 Amo-Chr7 7950946 7952818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0634 49 301 Expansin Gene Family AT2G39700 84.314 1.42e-165 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0634 - - gmx:100809018 495.352