Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0631 ATGGAGAATGGTGGTGAAATGATAAAAAAAACTAAAGGGAGACAAAAGATAGAGATAAAGAGAATTGAGAATAAGAAAAATTGTCAAATCGCTTTTACAAAGAGAAAAGACGGCTTATTGAAAAAAGCAAATGAATTAAAATCTTTATGTGATGCTGATGTTGATTTGATTATATATTCTTCCAATGGAAAAGCCTATTACTATGGCGATTCTTCGTTAAAAACAATGAAAATGGCTCTCTCAAACGAGCAACAACCTCAAGGTAATAATCAGTTTCTTGGTTACATCATCGAGGGAATGTCTAGGATCGACATGCAAAATCTTATTAAAAAGAACGATTCACTTGTGGATCGATTAAATGCTGAGAAAGAACGAGCCAAAACTCTTTCTAAAACTTTAAAGACAATTAAAAATGACAACAACATTATTAATTGGTGGGATACGATTGGTCAAAGTTGTGAAAAAAATAAAGAGATGGAAAAAATTCTTGTAGTTCTTCAGCAGACTTTGAAAAATCAAATTTCACACAAAATTGTTGCAAATCAGGCTGCAGTTACAACTGTAACTGAGAGTGTGGCATCTACATTTTATCACGGTGATCAAACCATGGATCAAGTTAATCTCAGAGTTATTGGATCATATCCTACTCATGAAAGTATGAGTACTTTTTCCAACATAACATTTGCTACTGGTGTCGATCCTTTTGACGCTGCGAGAGAATTCGGTGACCAAAATGCCCCTATTTGGTATCCATCATACCAACACCAACAAGGATATAATGGTCTATTTCTCTACGATGTAAGTAACAGGAATGATGTTGGGAGAAGCAGCGGCGGCGACGATACTGGAAATTATCTTTATTATTCAAATTCTAACCATAATAACGGTAGAGGCTTTTTTGGTTTTCCATACCATAATAATCCATTTAACAATAGTTATGGCCGCAGAAGATTCTTCTAA 960 0.3438 MENGGEMIKKTKGRQKIEIKRIENKKNCQIAFTKRKDGLLKKANELKSLCDADVDLIIYSSNGKAYYYGDSSLKTMKMALSNEQQPQGNNQFLGYIIEGMSRIDMQNLIKKNDSLVDRLNAEKERAKTLSKTLKTIKNDNNIINWWDTIGQSCEKNKEMEKILVVLQQTLKNQISHKIVANQAAVTTVTESVASTFYHGDQTMDQVNLRVIGSYPTHESMSTFSNITFATGVDPFDAAREFGDQNAPIWYPSYQHQQGYNGLFLYDVSNRNDVGRSSGGDDTGNYLYYSNSNHNNGRGFFGFPYHNNPFNNSYGRRRFF* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0631 319 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Amo07g0631 319 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Amo07g0631 319 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Amo07g0631 319 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Amo07g0631 319 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Amo07g0631 319 Coils Coil 105 139 - -
Amo07g0631 319 Gene3D - 24 92 IPR036879 GO:0003677|GO:0046983
Amo07g0631 319 SUPERFAMILY SRF-like 13 80 IPR036879 GO:0003677|GO:0046983
Amo07g0631 319 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 173 - -
Amo07g0631 319 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0631 Amo-Chr7 7873925 7875509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0631 9 176 Type I MADS-box Gene Family AT3G04100 30.814 3.48e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo07g0631 SRF-TF 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0631 - - ahf:112762769 514.612