Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0624 ATGCGGAGGCACAGTCCAGGATACTACAGTCCGCCGAGGAGAGGGTACGGCGGCAGGGGAAGATCTCCTCCGCCGCCACCTCCTCCGTCGAGGAGGGGTTACGGTGGTGGTGGCGGCGGCGGCGGCGGGAGGCGCGGCAGGGATAACAACAACAATGGAAGCCTTCTTGTTCGCAACATTCCCCTCGATTGCCGACCCGAGGAGCTTCGAGTCCCCTTCGAGCGGTTCGGACCCGTTCGTGATGTCTACATTCCCAAGGATTATTACTCAGGAGAACCTCGAGGCTTTGCGTTTGTGCAATTTGTGGATTCTTATGATGCTTCAGAGGCACAGTACCATATGAACAGACAAATCTTTGCTGGAAGGGAAATATCCGTCGTTGTTGCTGCTGAAACAAGAAAAAGACCAGAGGAAATGCGCCAAAGGACTAGGAGGACCATCGAACTATGGGGGGAGAAGGTCGCTCGCGCTCTCGCTCAGTATCACGCTCTCCACCTTATCACTCTGGTTCTAGAAGTAGATATCGCTCAAGATCATATTCTCCTGCTCCAAGAAGGCAAAGTGATTACTCTATTTCCCCTAGAAGGCAAGCAGAACACTCTAGATCACCTCGATCACCAAGAGGCCCCCCTAGAGAGCGAGATGCTGATCAGAAGCGCAGATCATATACTCCAGATTTTGGCAATGGTGTTGATCAGAATCAAAGCAATGGATATCCTGAGAAATCTACATACAAGTCTGAGGCTGATGAAGGTCAGTGGAAGTCATCTGGACGTAGACCATCGAGGTCACCACCTGGATCCAGATCTAGGTCAAGGTCTCCTGATTTGTCTCCTAGACATTGAAGACGAGGTAAAATGTCTTTGGCAATGTGCTGCATTCTGCTGA 888 0.5146 MRRHSPGYYSPPRRGYGGRGRSPPPPPPPSRRGYGGGGGGGGGRRGRDNNNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRQRTRRTIELWGEKVARALAQYHALHLITLVLEVDIAQDHILLLQEGKVITLFPLEGKQNTLDHLDHQEAPLESEMLIRSADHILQILAMVLIRIKAMDILRNLHTSLRLMKVSGSHLDVDHRGHHLDPDLGQGLLICLLDIEDEVKCLWQCAAFC* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0624 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Amo07g0624 295 MobiDBLite consensus disorder prediction 1 57 - -
Amo07g0624 295 SMART rrm1_1 54 127 IPR000504 GO:0003723
Amo07g0624 295 PANTHER OS02G0252100 PROTEIN 30 144 - -
Amo07g0624 295 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 30 144 - -
Amo07g0624 295 MobiDBLite consensus disorder prediction 18 32 - -
Amo07g0624 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Amo07g0624 295 Gene3D - 45 149 IPR012677 -
Amo07g0624 295 SUPERFAMILY RNA-binding domain, RBD 12 129 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0624 Amo-Chr7 7788543 7790807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0624 27 115 Eukaryotic Initiation Factors Gene Family AT3G11400 38.202 5.13e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0624 K12900 - gmx:100804294 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0471 17 9185075 9187325 Amo07g0624 07 7788543 7790807 hybridization