Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0618 ATGGAGGGTGCTGGTCCTAGTGGTTGTAGTGGAGAGGACTTTGAAGAGGACGTGGCAACGTCGGTCCCTGCGGCCGTACGACGGGCGCTGCAGCTGCTGGAGGAGGACGACGCTGACCTGAGGATACAGGCCGCCTGCGACATCCGCCGCCTCACCAAGAAATCACCGTGCTGCCGCCGACAGCTCCGCCACGCCGTCCGCCCGCTTGTCTCAATGCTCCGAGTTGACTCGTCCGAGTCACGCGAGTCCGCCCTTCTCGCCTTGCTTAACCTTGCCGTCAAAGATGAAAAGAACAAAGTTAGCATTGTAGAAGCAGGTGCATTAGAACCTATAGTAAGTTTCCTAAAGTCACAAAATCCAAACATGCAAGAATATGCAAGTGCATCATTGCTCACTCTCTCTGCCTCTGCAACCAACAAACCAATTATCACTTCTTCTGGTGCCATTCCTCTTCTAGTAAAGATTCTAAGAGATGGAACACCACAAGCTAAAGCTGATTCATTAATGGCCCTCTCCAATTTATCAACACACTCCGATAACCTCCACATCATCCTCGAAACCAATCCGGTCGCTTCAATAATCCGACTTCTCAAACCATGCAAGAAATCTTCAAAAACAGCGGAGAAATGCTGTGCTTTGGTAGAGTCATTGGTTGGTTATGACAAGTGCCGGACTGCGCTAACATGCGAAGAAGGCGGGGTTCTGGCAATTGTTGAAGTTCTTGAGAGTGGAACAAAGCAGGGTAAGGAACATGCTGTTGGAGCATTATTGAAAATGTGCCAGAGTGATAGGTGTAAATACAGAGAACCAATCCTAAGGGAAGGTGTTATTCCTGGACTTCTTGAACTCACAGTTCAAGGGACAGAGAAGTCTCAGCCAAAAGCACACACCCTTTTGCAATTACTTAGAGAATCACCTAATCCAAGATCAGAAACTGAGCCTAACACAATAGAGAACATAGTTTGCAACCTCATATCACAAATTGATGGGAAAGATGACCAAGCTGATGGTAAAGCTAAGAAGATGCTGGCAGAGATGGTCCAAGTCAGCATGGAAAGAAGTTTGAGACACTTACAACAAAGAGCAGCACTTGTATCCACCCCAAGTGATTTGTCTATTACTAGTTGTGCTTCTCAGGTTTCTTTAAATTGGTAG 1155 0.471 MEGAGPSGCSGEDFEEDVATSVPAAVRRALQLLEEDDADLRIQAACDIRRLTKKSPCCRRQLRHAVRPLVSMLRVDSSESRESALLALLNLAVKDEKNKVSIVEAGALEPIVSFLKSQNPNMQEYASASLLTLSASATNKPIITSSGAIPLLVKILRDGTPQAKADSLMALSNLSTHSDNLHIILETNPVASIIRLLKPCKKSSKTAEKCCALVESLVGYDKCRTALTCEEGGVLAIVEVLESGTKQGKEHAVGALLKMCQSDRCKYREPILREGVIPGLLELTVQGTEKSQPKAHTLLQLLRESPNPRSETEPNTIENIVCNLISQIDGKDDQADGKAKKMLAEMVQVSMERSLRHLQQRAALVSTPSDLSITSCASQVSLNW* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0618 384 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 19 353 - -
Amo07g0618 384 PANTHER U BOX DOMAIN-CONTAINING 19 353 - -
Amo07g0618 384 Pfam Armadillo/beta-catenin-like repeat 96 130 IPR000225 GO:0005515
Amo07g0618 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 106 148 IPR000225 GO:0005515
Amo07g0618 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 189 IPR000225 GO:0005515
Amo07g0618 384 SUPERFAMILY ARM repeat 28 324 IPR016024 -
Amo07g0618 384 Gene3D - 13 379 IPR011989 -
Amo07g0618 384 SMART arm_5 95 135 IPR000225 GO:0005515
Amo07g0618 384 SMART arm_5 177 219 IPR000225 GO:0005515
Amo07g0618 384 SMART arm_5 220 261 IPR000225 GO:0005515
Amo07g0618 384 SMART arm_5 54 93 IPR000225 GO:0005515
Amo07g0618 384 SMART arm_5 136 176 IPR000225 GO:0005515
Amo07g0618 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 64 106 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0618 Amo-Chr7 7655206 7659998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0618 4 303 U-box Gene Family AT2G23140 33.444 5.20e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0618 - - aip:107606755 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0482 17 9416011 9420101 Amo07g0618 07 7655206 7659998 hybridization