Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0600 ATGTTTTTGTTGCGCAAAATAACAATCTTCGTGATCAGGTTTCTTTTCTTACTTGTTGCTTTACAAATGTTAGTTTACATGGGGTCACCGGCCAAACCCTTGAGTTCAGAGACCGATGAAATAGCATTGCTTGCTTTGAAGGACAAGCTTACAAATAGCGATCCTCATGCTCTGCCATCATGGAATCAGTCTCTCCATTTTTGTGAATGGCAGGGCGTTACATGCAGTCGTCGCCACATGAGAGTCTCATCCCTACAATTGCAAAATCAATATTGGGGTGGTACTCTTGCGTCATCCTTAGGAAATCTAACGTTTCTCAGAGAGATCAATCTTACTAACATCTACTTGCATGGTGAAATTCCAAGAGAAATCGGTCGTTTAAAGAGGTTGAAGATTCTTGACTTGAGGAACAACAATCTTGGTGGTCATATTCCTGTGGAGATGATAAATTGTTCAAGCCTTGAGGTGATTATATTGTTATACAATAATTTAACTGGCAAAGTTCCTTCATGGTTTGGTTCTATGGTGCAACTCACTCAATTGGGGCTTGCAGCCAACGGTTTTGTTGGCAATATTCCGCCTTCTTTGGGAAATCTTTCATCGCTTCAGAAGTTCATAACTCCGACTTTGGGTAGGTTGTCGAATTTGAAACTTTTGGCTCTGAGTCTAAATAATTTTTCTGGCTTACTTCCTCCTTCACTTTACAACCTTTCAAATATTCAAACTCTTTTGTTAGCGGGCAACCAGTTAGTGGGTAATCTTCTCTCAAATATACCTCTGGCTTTTCCCAATCTTCAAAATTTTGCCTGTGGAGGGAACCTATTCACTGGTATTTTACCATTTTCAATATCGAATCTTTCCGAATTGCAAAAATTTGATATAGAAGAAAATGGTTTTTATGGACCAATTTCTCCTACTTTAGGAAGTTTACATAAACTCCGGGAATTTAAAGTTGGTCGTAATAGATTTGGATCTGGAAGAGCTCACGATTTGGATTTCCTTTCTTCATTGACTAATTGTACTCAATTGCAAAAGCTGGACTTTTCCGAAAATTATTTAGGCGGTGCATTGACAAGTTTAATAGGCAACTTATCAACCAATCTTATTTTGTTTGACATGGGATTGAATCAAATATCTGGAAGGATACCTGAAACAATTGGAAATCTATTTGGCTTAGCTTCACTTCTTATGGATGAGAATGCCCTTGAGGGACCAATTCCAAATTCAATTGGAAAGCTTAAAAATCTAGTGATAATATTCTTGAGTATGAACAATCTTTCAGGTAATATTCCTACTGTCATAGGCAATCTTACTATATTGTCAGTAGTTCACATGGACTTTAATGCATTTAAAGGAAGTATTCCATTTACCTTCAGATACTGTAAAAAGATGCACACATTCAGCGTTTCAGTAAACAATTTAAGTGGAAACATACCTACTCAAATCTTTGCCTATCAAAAAGATTTAGTAAATCTTGACTTATCCACCAACTCCTTTACTGGTTCAATCCCTGAGTTTGGTAATTTGATGCATCTTTCCAAATTATATATGTATGCAAACAAGTTTTCTGGTGTCATTCCCGTGGAACTTGGTGCATGTTCTACACTAACAGAACTTCGATTAGACAGAAACTTCTTCCATGGGAATCTACCCCCATTCCTAGGATCTTTAAGATCCCTTGAAAGGTTAGACCTTTCTAATAATAACTTCTCAAGCACAATTCCCCATGAACTTGAAAACTTGACTTTTTTGAGTAATTTGAACTTGTCTTATAACCATCTCTATGGTCAAGTCCCATTGGAAGGAGTCTTTGGTAACATCACTGTAATATCACTCATTGGAAATAATGATTTGTGCGGTGGGATACCTCAACTGAATCTCCCTCCCTGTCCTGAGTTTTCCTCAAACAAACATAAGAGCTCTCATAAAAAGATAATTATTCTCATCAGTGTGATTGGCGGGATTTTGATCTCTTTCATGATTTTTATTAGTATCTATTGCCTCAGAAAAAAGTCCGAGAAGTTATCTTTTTCACCATCACTAGAACATAGATACTTGAAGGTTTCCTATGGAGAGCTACATCAAGCAACAAATGGATTTTCTTCCTCCAATTTAGTTGGCACGGGAAGCTCTAGCTCTGTGTATAGAGGAACTCTTGTCCATTTTGAGAGACCTGTTGCTGTAAAAGTGTTGAATCTTCAAACATGTGGGGCATCAAAGAGTTTCATTGCCGAATGTAAAGTTCTAGGAAAAATTAAACACAGAAACCTTCTCAGTCTACTGACTTCTTGTTCAAGTGTTGATTACAAAGGGAATGATTTCAAAGCCATAGTGTTTGAGTTCATGTTTAATGGGAGTCTAGAAACTTTGTTGCACAACATTGTTGAAGATAGCGAATCCACAAATCTGAGTCTGAACCTTATGCAAAGGGTAAATATTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCACAATGATTCAGGAGAAGCCATAATTCATTGTGATATTAAGCCTAGCAATGTGCTTCTTGATGATGATATTGTTGCCCATTTAGGAGACTTTGGTCTAGCAAGACTTGTTCAAGGGGACAGAAGCTCTTTTACCAGTAATCATGGTAGTTCCTCTATAATTAAGGGAACCATCGGATATGTTCCACCAGAATATGGAGCAGGTGGGCCAGTATCACCACAAGGAGACATCTATAGCTATGGAATTCTTCTTTTGGAAATATTAACTGGAAAGAAACCAACAGATGACATGTTTGGTGAAGATCTAAGCTTACACAAATTTTGTAAAAAGGCAATTCCAGAAGGAATCACTGAAATTGTTGATTCAAGATTGCTAACTCTGTTTGGTAAAGGAGAAAGAAAGATCATGCAAAAGCAAAGTACCAAGGAGTGTTTAGTGTCCTTTGCCAGGATTGGAGTTGCATGTTCTCAAGAGTTTCCCACTCGACGGATGAACATTAAAGATATCATAGTGGAGCTGCATGCAATTAAACACAAACTGCTTCCATAA 3021 0.3747 MFLLRKITIFVIRFLFLLVALQMLVYMGSPAKPLSSETDEIALLALKDKLTNSDPHALPSWNQSLHFCEWQGVTCSRRHMRVSSLQLQNQYWGGTLASSLGNLTFLREINLTNIYLHGEIPREIGRLKRLKILDLRNNNLGGHIPVEMINCSSLEVIILLYNNLTGKVPSWFGSMVQLTQLGLAANGFVGNIPPSLGNLSSLQKFITPTLGRLSNLKLLALSLNNFSGLLPPSLYNLSNIQTLLLAGNQLVGNLLSNIPLAFPNLQNFACGGNLFTGILPFSISNLSELQKFDIEENGFYGPISPTLGSLHKLREFKVGRNRFGSGRAHDLDFLSSLTNCTQLQKLDFSENYLGGALTSLIGNLSTNLILFDMGLNQISGRIPETIGNLFGLASLLMDENALEGPIPNSIGKLKNLVIIFLSMNNLSGNIPTVIGNLTILSVVHMDFNAFKGSIPFTFRYCKKMHTFSVSVNNLSGNIPTQIFAYQKDLVNLDLSTNSFTGSIPEFGNLMHLSKLYMYANKFSGVIPVELGACSTLTELRLDRNFFHGNLPPFLGSLRSLERLDLSNNNFSSTIPHELENLTFLSNLNLSYNHLYGQVPLEGVFGNITVISLIGNNDLCGGIPQLNLPPCPEFSSNKHKSSHKKIIILISVIGGILISFMIFISIYCLRKKSEKLSFSPSLEHRYLKVSYGELHQATNGFSSSNLVGTGSSSSVYRGTLVHFERPVAVKVLNLQTCGASKSFIAECKVLGKIKHRNLLSLLTSCSSVDYKGNDFKAIVFEFMFNGSLETLLHNIVEDSESTNLSLNLMQRVNIALDVAFALDYLHNDSGEAIIHCDIKPSNVLLDDDIVAHLGDFGLARLVQGDRSSFTSNHGSSSIIKGTIGYVPPEYGAGGPVSPQGDIYSYGILLLEILTGKKPTDDMFGEDLSLHKFCKKAIPEGITEIVDSRLLTLFGKGERKIMQKQSTKECLVSFARIGVACSQEFPTRRMNIKDIIVELHAIKHKLLP* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0600 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Amo07g0600 1006 Pfam Protein kinase domain 702 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0600 1006 ProSiteProfiles Leucine-rich repeat profile. 559 582 IPR001611 GO:0005515
Amo07g0600 1006 Pfam Leucine rich repeat 129 187 IPR001611 GO:0005515
Amo07g0600 1006 Gene3D Ribonuclease Inhibitor 34 205 IPR032675 -
Amo07g0600 1006 Gene3D Ribonuclease Inhibitor 333 632 IPR032675 -
Amo07g0600 1006 Gene3D Ribonuclease Inhibitor 206 331 IPR032675 -
Amo07g0600 1006 SUPERFAMILY Protein kinase-like (PK-like) 675 997 IPR011009 -
Amo07g0600 1006 ProSitePatterns Protein kinases ATP-binding region signature. 706 729 IPR017441 GO:0005524
Amo07g0600 1006 SMART serkin_6 700 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0600 1006 SUPERFAMILY L domain-like 365 620 - -
Amo07g0600 1006 PANTHER LRR RECEPTOR-LIKE KINASE 38 1004 - -
Amo07g0600 1006 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 38 1004 - -
Amo07g0600 1006 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Amo07g0600 1006 Gene3D Phosphorylase Kinase; domain 1 663 781 - -
Amo07g0600 1006 SUPERFAMILY L domain-like 36 323 - -
Amo07g0600 1006 Gene3D Transferase(Phosphotransferase) domain 1 782 1004 - -
Amo07g0600 1006 ProSiteProfiles Protein kinase domain profile. 700 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0600 1006 SMART LRR_typ_2 413 437 IPR003591 -
Amo07g0600 1006 SMART LRR_typ_2 127 151 IPR003591 -
Amo07g0600 1006 SMART LRR_typ_2 581 606 IPR003591 -
Amo07g0600 1006 SMART LRR_typ_2 557 580 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0600 Amo-Chr7 7337212 7340510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0600 35 1003 Receptor kinase-like Gene Family AT3G47570 43.939 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo07g0600 Pkinase 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0600 - - ahf:112766919 1331.24