Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0595 ATGTTGCATTTCCGTTTCTTCAAGGCTATACTCAAAACTAATCTTCAAAGGATTAAAATACCCAATAAGTTTTCAAGGAGACATGGAAGCGCTCTTTCAAATCCAGTGTTTCTTAAGCCTCCAGATGGCACTCTATGGAAAGTGTATTGGACAAAAAAGAATAGTGATGAAGTTTGGTTTGTAAAAGGATGGAAGGAATTTACCAAAAACTACTCTCTTAATGAAGGACATTTAGTTGTGTTTAAATATGAAGAAACTTCTCAGTTTGATGTAATCATACTTGAGATAAATGATCTAGAAAGGGTTGGTGCATTTGTTCTGTATTGTTGTGAGTGTGTGTTTGGTGCAACTGAAAGCAGAAGATGCATACAAATTCAAGCTTTCAACAAGCATATTCATCCCAGAAATTTCAACAAGCATATTCATAACACTGTAACAGCAAGAAGTGCAGAACAGAGCAGACTACAGAGGAGAACTGGAGCTAACCTAGTTCAGGCCGGCGGTGAGACGAAGAGGATGATGGCTGGCGGCTGGGTGACACTGTAA 546 0.3864 MLHFRFFKAILKTNLQRIKIPNKFSRRHGSALSNPVFLKPPDGTLWKVYWTKKNSDEVWFVKGWKEFTKNYSLNEGHLVVFKYEETSQFDVIILEINDLERVGAFVLYCCECVFGATESRRCIQIQAFNKHIHPRNFNKHIHNTVTARSAEQSRLQRRTGANLVQAGGETKRMMAGGWVTL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0595 181 Pfam B3 DNA binding domain 13 91 IPR003340 GO:0003677
Amo07g0595 181 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 5 97 IPR039218 -
Amo07g0595 181 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 5 97 - -
Amo07g0595 181 CDD B3_DNA 4 94 IPR003340 GO:0003677
Amo07g0595 181 Gene3D - 2 97 IPR015300 -
Amo07g0595 181 ProSiteProfiles B3 DNA-binding domain profile. 3 97 IPR003340 GO:0003677
Amo07g0595 181 SMART B3_2 6 97 IPR003340 GO:0003677
Amo07g0595 181 SUPERFAMILY DNA-binding pseudobarrel domain 5 96 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0595 Amo-Chr7 7292871 7294134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0595 6 100 B3 DNA Binding Superfamily AT3G18990 37.113 1.68e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo07g0595 B3 4.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0595 - - lang:109346569 142.51