LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo07g0553	ATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGRTGTAGCGAAACTGATTGCAAAAGAGGAAAAATCAGCCACATTAAAATTATCTTCTGGGGAGACAAGTGGGAAATATTGGGTAAACCAGAAAACTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCCATGGGGTGGTGAAGTCCGGTTGCGAGGTCGAAATATTAAGTATGAATCATAGTTCTAATACTTTATAA	321	0.4206	MPLGTTIHNIEITLGKGGQLARAAGXVAKLIAKEEKSATLKLSSGETSGKYWVNQKTLGRAGSKCWLGKRPVVRGVVMNPVDHPHGVVKSGCEVEILSMNHSSNTL*	107

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo07g0553	106	PANTHER	RIBOSOMAL PROTEIN L2	1	89	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
	Amo07g0553	106	PANTHER	-	1	89	-	-
	Amo07g0553	106	SUPERFAMILY	Translation proteins SH3-like domain	1	86	IPR008991	-
	Amo07g0553	106	Pfam	Ribosomal Proteins L2, C-terminal domain	1	47	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Amo07g0553	106	Pfam	Ribosomal Proteins L2, C-terminal domain	53	86	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Amo07g0553	106	SMART	Ribosomal_L2_C_2	1	103	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Amo07g0553	106	Gene3D	-	1	53	IPR014722	-
	Amo07g0553	106	ProSitePatterns	Ribosomal protein L2 signature.	71	82	IPR022671	GO:0003735\|GO:0005840\|GO:0006412
	Amo07g0553	106	Gene3D	Ribosomal protein L2, domain 3	54	94	IPR014726	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo07g0553	Amo-Chr7	6558038	6558546	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo07g0553	1	86	Cytoplasmic Ribosomal Protein Gene Family	AT3G51190	38.182	2.96e-11	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo07g0553	K02886		-	cpap:5878356	144.821