Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0547 ATGGAAAACTCAGACCACAACGAACCCGAAAAGAAGAGGCCTCACCTCACTTCCGTTTCTTCTCGCGTGGCGCGAAACTCTCCATCGAACAACAAAACCGCTGATGCTGGAGTCTTACAAGCACAGAACCAGCAGCTCGTTCAAAAGATTGACATCCAAAAGCGTGCTTTGCATGACCTTGAAGAAAAAATTAGAGAGTTAAAAGAGCGGCAAAATACCCATGATGATTTGTTAATTGCAGTGAACCAATGTTGGATTCAGTTGTCTGATGATCTGACTCTTCTTGGTGTACGAGCTGGTAGAAGCAAAGATGCATTACAAACACTAGATTACCATAATAACCGTCAAGGTTCACTTCCTTCATGCCCTGCGGAGGATATATTTCTGTGTAGATTGATCCAGAAAGATTCTGTTGGTGGAAACAGTATTGGTGAGAGAATTAATTATGTTGAAGAAAGCCTTGCTTTACGCCGGTCATCTACGTTAGAGTTGTTGAAACTCCTTCAAGATACCATGGAGGCTCAGATGGAAAGAATTGACAGTATAGCCCAGGTTTTGCATGGCGAGTTATCTTCAGAAGATGCTATAATTCAGATGTCTCAGATTGATGACATGATGAAAGAAGAGGAAAGTAATTTACGTGAAATCATTAATGCTCTCAATGATTCACATAAAGAGTATACTATTGGAATTCAAAGTTATATCAGTTGGTGCTTACAAGATCAGTCTGAAGTTAAACGCCTTGCAGGTGACCTTGAAGAGAGCATAACTGGACTTGAAGAGAGAATGCAATCCCCTAGTGCTGATTCGGTTAACGGAAACTTGTCTCCTGAAAAACCCACAGACAGGACTATGAGTTTGCGTGAACTGAAGGATTCAATTGAGGAAGCAAAGATACTGAATGCTGATCGTCTTACTGAGCTTCAAGAGGCACATGAAGAAAATGAAACCTTGACAAAGCAATTCCAAGATTTTCAGAATGAACTGAATGATGACAAGTATATACGCACTTCCAGAATATATTCATTGACGAATGATCAACTTCAACATTGGATTGCTGAGTTAGCTCGGTATAAGATGTTGGTAGAGTCTTTGCAGGCGGGAAGTGTCCATGTCACAAAATGGGAGAAAGAGCTGAACTCCAAATTGGAGTCTGTTGATACTGCAAGGCATGCCATTGACTGTTCAGATTCCAGGATTGAAGAGCTGGAGGTTCAGTTGCAGAAGTGTACTATTGAAAAGAATGATCTTGAAATTAAGATGGAAGAGGCTATACAAGATACTGGGAGAAAAGATATCAAATCCGAGTTCCGTGTGATGGCTTCAGCTTTGTCCAAAGAAATGGGAATGATGGAAGCTCAGGTGAAGCGATGGAAGGATGCAGCTCATGAGGCGGTATCATTACGCGAGAAAGCTCATTCACTAAGAGCCGTGTTGAGTGGGAAGACAAGCGAAGTTAGCAGCCTTGCAAACAAATGTACTGAACAGGATTTGGAAATCAAGTCTTTAAGAGCATTGATTGAAAAGTTACAGAAGGAGAAACTAGAGTTGGAATTCATTCTGGAAATGCATGGACAAGAGAATTATGATAAAAGTACTCTGGCAGAAATTAGAGAATCTGAAAATAAAGCCCACTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATAGTCTTGAGTTAAGAGTAAAAGCTGCTAATGAAGCTGAAGAAGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAAATAGAGGACTTAAGAGCCAAGCTGGATGCAGCTGAGAGGTTTGTGTTTATGTATACTCCTACAACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAACATCTGATGAAGCAGGTGACTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGTGTGAAGACAAAACAAGTACACAGTTCTTTAGTGGCTGAGAAGCAGGCCTTGGCAAAGCAACTTCAACAAATTAACTCTTTAATTGATGCCTCAAAAATGAGGATTGCACACGTTGAGGAACAGATGAAGGCTGTTCTATCAGAAGGCATCAAATGTAATCAGGAGGAAAAAAACCTTCATGTCACCCTGGAATTTGCCAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTAAAGTGGCTGAAGTCTGCCCTTTCCTCTTCGGAGAAAGAATACGACCAAATACAGAAAGATGTGGCAGCAGTTGAAATGGAATTAGAAAGTGAAAGGTGCATTTCTCTCAATTCTAAGTTCATGCAGGAGTCACAATGGATGAAGCTCGAGGAAGAACTCAGGGAAGTGAACAGGCAAATCGCCGAGCTGAGTTCTGAAACCGGTGAAACCGCAATACAAAAGCTCGAAGCGGAGATAAAGATCTGTCAAGAACATGATTTAAGTGCACCGTCTGTGGTGATTGTCAAATGCTATCATCTGTTCTGCAATCCATGCATACAAAGAAATCTAGAGCTCAGGCACCGCAAGTGCCCTGCATGTGGAACAGCATTTGGACAAGTGATGTTCGCTTTGTTAAAATATGAGACTCATGTTAGTGTACCTGTTATACTTATTTGGATCACTGTGTTGGTATTGGTACTTTAG 2613 0.4122 MENSDHNEPEKKRPHLTSVSSRVARNSPSNNKTADAGVLQAQNQQLVQKIDIQKRALHDLEEKIRELKERQNTHDDLLIAVNQCWIQLSDDLTLLGVRAGRSKDALQTLDYHNNRQGSLPSCPAEDIFLCRLIQKDSVGGNSIGERINYVEESLALRRSSTLELLKLLQDTMEAQMERIDSIAQVLHGELSSEDAIIQMSQIDDMMKEEESNLREIINALNDSHKEYTIGIQSYISWCLQDQSEVKRLAGDLEESITGLEERMQSPSADSVNGNLSPEKPTDRTMSLRELKDSIEEAKILNADRLTELQEAHEENETLTKQFQDFQNELNDDKYIRTSRIYSLTNDQLQHWIAELARYKMLVESLQAGSVHVTKWEKELNSKLESVDTARHAIDCSDSRIEELEVQLQKCTIEKNDLEIKMEEAIQDTGRKDIKSEFRVMASALSKEMGMMEAQVKRWKDAAHEAVSLREKAHSLRAVLSGKTSEVSSLANKCTEQDLEIKSLRALIEKLQKEKLELEFILEMHGQENYDKSTLAEIRESENKAHSQAEMLKNALDEHSLELRVKAANEAEEACEQRLAAAEAEIEDLRAKLDAAERFVFMYTPTTIGQAYEDMQTQNQHLMKQVTERDDYNIKLVSESVKTKQVHSSLVAEKQALAKQLQQINSLIDASKMRIAHVEEQMKAVLSEGIKCNQEEKNLHVTLEFAKWELADAEKELKWLKSALSSSEKEYDQIQKDVAAVEMELESERCISLNSKFMQESQWMKLEEELREVNRQIAELSSETGETAIQKLEAEIKICQEHDLSAPSVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQVMFALLKYETHVSVPVILIWITVLVLVL* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0547 870 MobiDBLite consensus disorder prediction 1 35 - -
Amo07g0547 870 Coils Coil 206 226 - -
Amo07g0547 870 CDD RING-HC_BRE1_like 808 837 - -
Amo07g0547 870 PANTHER RING FINGER PROTEIN-RELATED 12 842 IPR013956 GO:0004842|GO:0010390
Amo07g0547 870 Coils Coil 393 427 - -
Amo07g0547 870 Coils Coil 43 77 - -
Amo07g0547 870 SUPERFAMILY RING/U-box 797 843 - -
Amo07g0547 870 MobiDBLite consensus disorder prediction 19 35 - -
Amo07g0547 870 Coils Coil 537 557 - -
Amo07g0547 870 Coils Coil 493 523 - -
Amo07g0547 870 MobiDBLite consensus disorder prediction 260 282 - -
Amo07g0547 870 Coils Coil 702 743 - -
Amo07g0547 870 Coils Coil 564 598 - -
Amo07g0547 870 ProSiteProfiles Zinc finger RING-type profile. 797 836 IPR001841 -
Amo07g0547 870 Pfam Zinc finger, C3HC4 type (RING finger) 809 836 IPR018957 GO:0046872
Amo07g0547 870 MobiDBLite consensus disorder prediction 260 281 - -
Amo07g0547 870 ProSitePatterns Zinc finger RING-type signature. 813 822 IPR017907 -
Amo07g0547 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 846 IPR013083 -
Amo07g0547 870 Coils Coil 762 782 - -
Amo07g0547 870 MobiDBLite consensus disorder prediction 1 17 - -
Amo07g0547 870 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0547 Amo-Chr7 6478588 6490967 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0547 K10696 - gmx:100796610 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0109 17 1460303 1472628 Amo07g0547 07 6478588 6490967 hybridization