Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0546 ATGCGTCGAGGTAGAGATGCCGTCGCCGTCGCCGCCGCAGCCGTAGCAGCAGATCCGACGCATCCAAACGCCGATTCAAGAAACAACGTCGGAGAAACGCGGTTTCGCGGAGTGAGGAAGCGACCGTGGGGAAGATTCGCGGCGGAGATAAGGGATCCATGGAAGAAGGCGCGCGTGTGGCTTGGAACATTCGATTCCGCCGAGGACGCCGCCAGAGCATACGACGCTGCCGCCCGATCCTTCCGTGGACCAAAAGCAAAGACAAATTTTCCGTTCCCCAACGCCGAAATCGGAATCTCACACTCTCAGATTCCGATTCACGGTTACGATGATCCGGTTCACGGGTTCGGAAAGTACGAACCGGTTCAGGTGAACCGGCCAACGAGCAGCGGCATGAGCAGCACGGTTGAATCGTTCAGCGGACCTAGGGTTTCGTCAACGGCGGCGCTTCCAGCGGTTGATCGTCGCCGGAGGAAACCGGAGAAGCCGGTTGTAGTTCCGGTCGACGATTGCCACAGTGATTGCGATTCGTCATCAACCATCGACGACGAGGATTCGTTCCGGAAAACCCTAACTTTCGATCTAAACCTTCCGCCGCCGGAGGAAGACGACGTCGGTTTCACCGACGAGGAGATTCGCGCCACCGCCTTGTGCCTCTGA 660 0.5833 MRRGRDAVAVAAAAVAADPTHPNADSRNNVGETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPFPNAEIGISHSQIPIHGYDDPVHGFGKYEPVQVNRPTSSGMSSTVESFSGPRVSSTAALPAVDRRRRKPEKPVVVPVDDCHSDCDSSSTIDDEDSFRKTLTFDLNLPPPEEDDVGFTDEEIRATALCL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0546 219 MobiDBLite consensus disorder prediction 127 145 - -
Amo07g0546 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 1 185 - -
Amo07g0546 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 185 - -
Amo07g0546 219 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Amo07g0546 219 MobiDBLite consensus disorder prediction 127 165 - -
Amo07g0546 219 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Amo07g0546 219 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Amo07g0546 219 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Amo07g0546 219 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Amo07g0546 219 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Amo07g0546 219 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Amo07g0546 219 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0546 Amo-Chr7 6466876 6468366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0546 1 219 AP2-EREBP Transcription Factor Family AT1G50640 49.153 9.82e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo07g0546 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0546 K09286 - cpap:110808864 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0108 17 1448203 1449820 Amo07g0546 07 6466876 6468366 hybridization