Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0521 ATGCCAAATCCAGTGCAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCGTGATGGTGAGATTTTGTTTGAAAAGGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAATGGAACTTCTAACATCAAAGTAAACATATTCGACATGAGTGCCCTCGAAATTGATTATCCTTCCAATGGCCGAATCGGGGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGCCACGAAGGGGCCGGGGCCGGCCGAAGAAAAAAGTGATAGCAGAACCAAAGCAATCATGTGCTTCTACAAGCAAAATAATGAAAAGTGCCATCAAAACTAAAGATATAGATAAAAATCCCAATACACAAAACTTGAAGCTGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGACAGCAGATCTTAAGCTGCCAATAGTTCAACGTGCCATACCAGATATGGATGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGCCATAAAGATTAAGCAAATGCACCAAACAGGATCACCAGCAAATCTTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCASATAGGAAGAKTGCRCTTATCTCTAYTTGGCGCTTGTTCCTTGAAGAAAATAACTTYAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGACAAWGTCCAGATRTTKAGATCAATGGAGTATGTTCAGGGATCAAGAGTTGTAACAGAGTCATAGTTTTCATCATACTAAATGGTTGCATTGCAGTGTTATCTCCTTACTACCATAACTAG 906 0.3962 MPNPVQLQPPDGTEWRIDWTNRDGEILFEKGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMSALEIDYPSNGRIGDDNSVEILDEPPPRRGRGRPKKKVIAEPKQSCASTSKIMKSAIKTKDIDKNPNTQNLKLHVENEKDGQSEETADLKLPIVQRAIPDMDVIREAKKFKSKNPSFAIKIKQMHQTGSPANLPVCFFRMYFENTKQYAILRVGKKQWHATLIYYPXRKXALISXWRLFLEENNFKAGDVCIFELINRQXPDXXINGVCSGIKSCNRVIVFIILNGCIAVLSPYYHN* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0521 301 Gene3D - 1 66 IPR015300 -
Amo07g0521 301 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 262 - -
Amo07g0521 301 CDD B3_DNA 197 262 IPR003340 GO:0003677
Amo07g0521 301 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Amo07g0521 301 SMART B3_2 181 276 IPR003340 GO:0003677
Amo07g0521 301 MobiDBLite consensus disorder prediction 78 100 - -
Amo07g0521 301 PANTHER B3 DOMAIN-CONTAINING 2 262 - -
Amo07g0521 301 Gene3D - 164 269 IPR015300 -
Amo07g0521 301 Pfam B3 DNA binding domain 5 63 IPR003340 GO:0003677
Amo07g0521 301 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Amo07g0521 301 CDD B3_DNA 2 63 IPR003340 GO:0003677
Amo07g0521 301 SUPERFAMILY DNA-binding pseudobarrel domain 174 262 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0521 Amo-Chr7 5970092 5971252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0521 5 260 B3 DNA Binding Superfamily AT3G18990 25.606 1.65e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo07g0521 B3 6.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0521 - - aip:107621185 505.368