Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0520 ATGACTTATGGCGTATTGCATTTCATAGCATTCCAGCAGTCTTCTTCAGAAAACACTTTTAAGAAAACAAAGTATGTAAATCTACGCAACAGAGAGAAGCAGTGGCCTGTAACATTGATCTATTATCCGACTAGGAAAATTGCCATTTTGTCCGCCGGTTCGGTCTCGTTCGCTCGAGAAAATAACTTGAAAGCCGGAGACATTTGTATCTTTGAGCTTGTTTACAGAGAAGGTGCAGAACTTGATGCTCATATTTTTCTAAGGGATGCTTAA 273 0.3956 MTYGVLHFIAFQQSSSENTFKKTKYVNLRNREKQWPVTLIYYPTRKIAILSAGSVSFARENNLKAGDICIFELVYREGAELDAHIFLRDA* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0520 90 Pfam B3 DNA binding domain 22 86 IPR003340 GO:0003677
Amo07g0520 90 SMART B3_2 8 89 IPR003340 GO:0003677
Amo07g0520 90 SUPERFAMILY DNA-binding pseudobarrel domain 19 86 IPR015300 -
Amo07g0520 90 Gene3D - 7 89 IPR015300 -
Amo07g0520 90 ProSiteProfiles B3 DNA-binding domain profile. 1 89 IPR003340 GO:0003677
Amo07g0520 90 CDD B3_DNA 20 86 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0520 Amo-Chr7 5968817 5969425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0520 25 74 REM Transcription Factor Family AT1G49480 44.000 5.02e-08 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo07g0520 B3 9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0520 - - aip:107622451 74.7146