Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0518 ATGGTTGCTAACACCAGGTTCATAACATTGCAGAAATTACCAATAACGTTCACTGAAAAATATGGTTCTGGCCTATCAAACTCATTGTATCTTAACCCTCCAGATGATATTGAATGGAGAGTAGATTGGACTAATCATGATGGTGAAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTATGGTTTAAGTATAATATTAGAACTTCTCACATTAAAGTACACATATTTGACATGAGTTGCCTCCAAATAGAGTATCCTGCCAATGATCAAATCAAAGAGCAGCTGCCACGCAGGGGTCAGCAGCAGCCGGTGAAAAGGCCAGAAGAACCAAGAGATGTGGATAGCAGTTCTAACACCCAAAACATGAGACTTAACCAGGGACGACAGAAGAAAAGATTGTATGAACAATTGCCAAGAGATGTCCAGGGCCAACTGAGAAAAAAACTGAGAGCACTAGTGTCATCTGCTTCTAAAGGTAGACAGTTGAAAAATGACACACAAATCAGGGATTTGGAAAGAAGCCTCAGTTTGCACAATATTAAATCCAAAGAAAAAAACCATGAGATGCCAGTCTCTGTCAATCAAGATTCTAATGGCAAAAGGAATAGAGGAAAAGATTCTTTATCTTCTGTTAGGCCCTGTCCTACAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGAAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCACAATCGAGAGCACCATGTTACTTTCCAACTAAATTCTTCAGAAAGTATTTTGAAAATAACCCCCAAAATGCAAATATAAGATTTGGAAAGAAGTTGTTCCCTGCTAAGTTGATTTGTAGGCCATCATCATGTGATGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCCAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAAGATCCGGTGCTTGATGTTTAG 1005 0.3861 MVANTRFITLQKLPITFTEKYGSGLSNSLYLNPPDDIEWRVDWTNHDGEILFKKGWKEFVAYYSLDHGHLLWFKYNIRTSHIKVHIFDMSCLQIEYPANDQIKEQLPRRGQQQPVKRPEEPRDVDSSSNTQNMRLNQGRQKKRLYEQLPRDVQGQLRKKLRALVSSASKGRQLKNDTQIRDLERSLSLHNIKSKEKNHEMPVSVNQDSNGKRNRGKDSLSSVRPCPTRPESLKEAKKFKWKKPSFIIKITQRSQSRAPCYFPTKFFRKYFENNPQNANIRFGKKLFPAKLICRPSSCDAFISAGWNLFARASKLQAGDVCLFKLINRKDPVLDV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0518 334 MobiDBLite consensus disorder prediction 190 229 - -
Amo07g0518 334 SUPERFAMILY DNA-binding pseudobarrel domain 239 327 IPR015300 -
Amo07g0518 334 MobiDBLite consensus disorder prediction 105 151 - -
Amo07g0518 334 Gene3D - 3 91 IPR015300 -
Amo07g0518 334 CDD B3_DNA 243 328 IPR003340 GO:0003677
Amo07g0518 334 ProSiteProfiles B3 DNA-binding domain profile. 1 90 IPR003340 GO:0003677
Amo07g0518 334 SUPERFAMILY DNA-binding pseudobarrel domain 12 97 IPR015300 -
Amo07g0518 334 PANTHER B3 DOMAIN-CONTAINING 12 334 - -
Amo07g0518 334 SMART B3_2 7 90 IPR003340 GO:0003677
Amo07g0518 334 SMART B3_2 245 333 IPR003340 GO:0003677
Amo07g0518 334 Gene3D - 227 334 IPR015300 -
Amo07g0518 334 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 334 - -
Amo07g0518 334 ProSiteProfiles B3 DNA-binding domain profile. 300 334 IPR003340 GO:0003677
Amo07g0518 334 CDD B3_DNA 13 88 IPR003340 GO:0003677
Amo07g0518 334 Pfam B3 DNA binding domain 12 88 IPR003340 GO:0003677
Amo07g0518 334 Pfam B3 DNA binding domain 249 329 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0518 Amo-Chr7 5964813 5966083 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0518 12 334 B3 DNA Binding Superfamily AT3G18990 24.615 2.42e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo07g0518 B3 3.8e-10 CL0405