Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0505 ATGGAATTCACCTCTTTTTCTTGGGAAATCAATTCCATTGAAGATCCAAGCATACCACAACACTTCTATTTCCACGATTGCTTCTCCATCATCTTCAGTTTCACCAAAGAATTGATCCAAATTACTCAACCCACAAGTCCAACCTCTGACTCTGAGGTTGACTTTTCTTCTACAACTCTGGCCAACGAAGCGTTCTTGGTTCCTTCCGATATCCTGTGTAATTGTACTCCCTTCACAGACCTCAATGGAGAAAACACCGCTTTCTTACATGACGTCTTCTCTTCATTGCCTCTATCCCGTCAGATATTGGACCAAATTTTACCTGCAATGGGCGAAACCGCAAGAACGATTCGAAGCCGTGAAGGGTGTGACTCCAGCATGCCGGAGATTGTTGTGAACCTTTATATTACTACGCACATTGTTGTAGAAGATTCTGATTTCTATAATGATGATCTTCGTCAAAACGTTCCTGAACTGGCACAACTCGTGAATCTGTTGGAGAGACCCAGAATTGATAAGCAAGAAGATGATGCTGAACAACAATGCGCGATTTGCTTGGAAGAGTTTGGCCATAGTATTGAAGATTCAAGTGTAGAAGTTGTTCGCACAAATTGCTCGCATGTTTTCCATGAAAGCTGCATATTCCGTTGGCTCCGGCGTTGTGCCGACCGGCAATCGCCCTATTCTTGCCCGTTATGCCGCTGTAGCATATTTCCAACCTCACATATGGATGAGGAATAG 741 0.4372 MEFTSFSWEINSIEDPSIPQHFYFHDCFSIIFSFTKELIQITQPTSPTSDSEVDFSSTTLANEAFLVPSDILCNCTPFTDLNGENTAFLHDVFSSLPLSRQILDQILPAMGETARTIRSREGCDSSMPEIVVNLYITTHIVVEDSDFYNDDLRQNVPELAQLVNLLERPRIDKQEDDAEQQCAICLEEFGHSIEDSSVEVVRTNCSHVFHESCIFRWLRRCADRQSPYSCPLCRCSIFPTSHMDEE* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0505 246 SUPERFAMILY RING/U-box 181 240 - -
Amo07g0505 246 SMART ring_2 182 233 IPR001841 -
Amo07g0505 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 239 IPR013083 -
Amo07g0505 246 ProSiteProfiles Zinc finger RING-type profile. 182 234 IPR001841 -
Amo07g0505 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 153 235 - -
Amo07g0505 246 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 153 235 - -
Amo07g0505 246 CDD RING-H2 182 234 - -
Amo07g0505 246 Pfam Ring finger domain 181 234 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0505 Amo-Chr7 5721407 5722147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0505 172 244 C3H Transcription Factor Family AT5G47610 40.741 1.61e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0505 - - adu:110273516 503.827