Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0493 ATGGCCTCCGCCTTCAGGGACCGCACCTCCGAGTTCCGGTCGGTGACGGAGACTCTCAAGAAGAAGATCGGAGCCCCCACTCCGCCACCGTTGCCTAACCAACCGGAAAATGCTCCCTCCTCCACCGACTCTCCGGTTCCAAATTCCAGATCCGAATTCAACCGAAAGGCCTCTCGGATCGGTTTGGGAATCCACGATACTTCACAGAAGATCGCAAGGCTCGCCCAGCTGGCGAAGAAATCGTCGATTTTCAATGATCCGATTGTGGAGATACAGGAACTGACGGCTGTGATTAAGAACGAGATCACGGCGCTGAACGCGGCTCTTTCGGATTTACAGACGATTCAGAACATGGAGATTGCAGATGGGATGTACTCGGAGGATAGGGTTGTTCACTCCAATGCCGTTTGTGATGACTTGAAGAGCAGGCTCATGGGCGCCACAAAGAAACTCCAAGATGTCTTGACCACTAGAACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAGATATTTTCCAAGAATACATCCAGAGAGAACCCTTTTCAGCATCACCCAAAGCCAGCCCATGTACCACCCCCGTGGTCAAATTCATTAAATCCATCTGAAGACTTGCAACAGCAGTCAGCACTAACTTCAAATGGAGTACCAGTTGGCAATCAACTAAGACGAAGGTTAGCTGTGGACAATGCTCCAACCCCCCAAATGGAAATGTCTATGGTACAGCAGGTTGTTCCTCACCAAGATAATTATGCTCAAAGTCGGGCAACTGCACTGCACAGTGTTGAATCTACTATCACAGAACTTAGTGGGATCTTCACACATTTGGCTACAATGGTTGCCCAGCAAGGGGAACTAGCCATCAGGATTGACGACAACATGGAGGAAACATTGGCAAATGTTGATGGAGCTCACAGTTCTTTATTGAGGCATCTTAACAGAATATCATCAAATAGGTGGCTCCTAATTAAGATATTTGCTATTTTGATATTTTTCCTAATGATCTTCATATTCTTTGTGGCCTAA 1026 0.4717 MASAFRDRTSEFRSVTETLKKKIGAPTPPPLPNQPENAPSSTDSPVPNSRSEFNRKASRIGLGIHDTSQKIARLAQLAKKSSIFNDPIVEIQELTAVIKNEITALNAALSDLQTIQNMEIADGMYSEDRVVHSNAVCDDLKSRLMGATKKLQDVLTTRTENIKAHENRKQIFSKNTSRENPFQHHPKPAHVPPPWSNSLNPSEDLQQQSALTSNGVPVGNQLRRRLAVDNAPTPQMEMSMVQQVVPHQDNYAQSRATALHSVESTITELSGIFTHLATMVAQQGELAIRIDDNMEETLANVDGAHSSLLRHLNRISSNRWLLIKIFAILIFFLMIFIFFVA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0493 341 MobiDBLite consensus disorder prediction 1 52 - -
Amo07g0493 341 MobiDBLite consensus disorder prediction 160 208 - -
Amo07g0493 341 CDD SNARE_syntaxin5 252 327 - -
Amo07g0493 341 MobiDBLite consensus disorder prediction 37 52 - -
Amo07g0493 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Amo07g0493 341 SMART tSNARE_6 244 311 IPR000727 -
Amo07g0493 341 SUPERFAMILY t-snare proteins 48 304 IPR010989 GO:0016020|GO:0016192
Amo07g0493 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo07g0493 341 Pfam SNARE domain 286 337 IPR000727 -
Amo07g0493 341 PANTHER SYNTAXIN 4 340 IPR045242 -
Amo07g0493 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 5 21 IPR021538 -
Amo07g0493 341 Gene3D - 48 304 - -
Amo07g0493 341 PANTHER SYNTAXIN-31 4 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0493 Amo-Chr7 5488685 5493091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0493 1 341 SNARE and Associated Proteins AT5G05760 65.497 8.19e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0493 K08490 - gmx:100777383 492.271