Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0478 ATGCCGTATGCTACAACAGCCGCTATGCCTTTGAGTTCAGAAACCGACAAGCTCGCTTTGTTAGCTTTGAAGGTAAAGCTTACCAATGGTAATCATGACAATAATGCTCTGCCATCATGGAATGAGTCTCTCCATTTCTGTGAATGGCAGGGCGTTACGTGCAGTCGCCGCCACAAGAGAGTCTCAGCCTTGCAACTGCAAAATCAAGACTTGGGAGGAACTCTTGGACCAACTCTTGGAAATCTAACCTTCCTCAAGAAGCTCAATCTCACTAACGTCAACCTGTATGGCGAGATTCCAAGAGAAGTTGGTCGTTTGAAGAGGCTTCAGATTCTCTGCTTAGACATGAATAATGTTCATGGGGAAGTTCCTATGGAGATAACCAACTGCTCCAAGCTTGAGGTAGTTTTCTTGACGCACAACAATCTCACTGGGAAAGTTCCTTCATGGTTTGGATCCATGGTGCACCTTACTTGGTTGCAACTTGGAGCCAATAATTTAGTTGGAAGAATTCCACCTTCCTTGGGAAATCTTTCATCGTTGGAGACTCTGTCACTTGCATACAATCATCTGGAAGGAAATATACCTCATATTTTGGGTAGGTTATCCAATTTGAATTATATTTTTCTTGGTTCAAATAATTTGTCAGGTATGATTCCTCCTTCACTTTACAACCTTTCCAATATTCGACATTTTGATTTAGGGAAAAACCAATTAGTGGGTACTCTTCCTTCAAATATAGACCATGCTTTTCCCAATCTCCAGCAGTTTACTATTCCATTGAACCAATTTACCGGAACTTTTCCATCTTCAATATCCAACCTGTCTCAGTTGCAAGTGTTTGATATAGGAGTGAATAGTTTTAGAGGACCAATTCCTCTTACTTTGGGACGCTTGAACAAGCTTCAGGTACTTATAATGGATTATAACAATCTTGGAAGTGGACAACCTCATGATTTGGATTTCCTTTCCTCACTAACCAATCTTACTCAATTGCAAAGGTTGTCTTTTGAGGCAAATAATCTAGGTGGTGTATTGCCAGATCTCATAGGCAACTTATCTACCCATCTCTATTTACTTGATATGTGGGGATCAATTCCAGATTCAGTTGGAAAGCTTAAAAATCTAGCAAGATTGAACTTGCAACAGAACAAGTTATCTGGTAACATTCCTAGTGTTATTGGCAATCTTACTATGTTATCTGAAGTTTATCTTGGCATCAATGAGTTAGAAGGAAGCCTTCCATTTACTCTTAGGTACTGCAGCATGATGCAGAAATTTGTTGTAGACACAAACTACTTAAGTGGTAATATACCCAATAATACATTTGGGTATCAAAAAGGTTTAATAACTCTTGATTTATCCATCAATGCCTTGACTGGTTCCGTTCCTTCAGATTTTGGTAACTTGAAACAACTTTCCATACTGTATCTACATACAAATAATTTGTCTGGTGAAGTTCCCCTGGAACTAGGTGCTTGTTCTGCTTTAACAGATTTTTGGCTGACGAGAAACTTCTTTCATGGAAGTATACCTTCGTTCTTTGGTTCTCTAAGAAATCTTGAAAACTTAGACTTCTCAATCAACAACTTCTCAGGCACAATTCCGAATGAACTTGAGAATCTGACTTTTCTGAATTATTTGAACTTGTCTTTTAACCATCTTTATGGTGAGGTCCCAATAGGAGGAATCTTTAGAAACATCACGGCAATGTCACTCATTGGAAACGAAGATCTCTGTGGTGGGATACCTCAGCTGAATCTCCCTCCATGTCCTGAGTTGCTTTCACATAAACATAAGAGTTCTTTTAAAGTTACCCTGATCATTGTAATTAGTGGGGTTTCGGCATCTTTTCTGGTTTTCATCTGCATTTGTTATTTGAGGAAAAAGCCCAAAACATTATCTTCTTCACCATCACTGGAACATAGGTACTTGAAGGTTTCTTATGGAGAGCTACATCAAGGAACCGACGGATTTTCTTCATCAAATCTAGTTGGCACCGGAAGCTTTGGCTCTGTATATAAAGGAACACTTGTCCAATTTGAAAGACCTATTGCTGTGAAGGTGTTTTTCATGGCCGAATGCAAAGCTCTCGGAAAAATCAGGCATCGGAATCTTCTAAATATACTGACTTGCTGTTCAAGTCTCGATTATAAAGGTGATGATTTTAAGGCCATAGTGTTTGATTTCATGTCTAACGGGAGTCTAGAGACCTTGTTGCACAACAATGAAGAAAAGGAGTCCAAAAACCTAAATCTCAACTTTGAACAAAGGGTTAACATTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCACAATGATTCTGAGGAAGCTATAGTTCATTGCGATGTTAAGCCGAGCAATGTTCTTCTTGATGATGACATGGTTGCCCACTTGGGGGATTTTGGGCTTGCTAGGCTCCTTCATGGTCATGGAGGCATTGATTGTTCTAGTGGAGATCATGTTAGTTCATCTGCAATTAAGGGAACTATTGGATATCTTCCACCTGAGTATGGAGCAGGTGGCTCAGTGTCAGCAGAAGGAGACATGTATAGCTATGGAATTCTTCTTTTGGAGATGATCACTGGAAAGAAACCAACTGATAGCATATTCGGTGAAGGCCTAAGCTTACACTTGTTCTGTAACATGGCAATTCTTGAAGGAATCAGTGAGATTGTTGATTCAAGATTGCTCATTCCAATTACTGAACAAGAGGGAAGAAGGGTCACAAGGCAGCAAAATATGGAAGACACCATTCGAGAATGTCTTGTGTCTTTTACTAGGATTGGAATTGCATGTTCTGAAAAGGTTCCATCTCAACGAATGGGCATAAAAGATGTCATAATGGAGTTACATGCAATTAAACAGAAACTGCTTTCATAA 2886 0.394 MPYATTAAMPLSSETDKLALLALKVKLTNGNHDNNALPSWNESLHFCEWQGVTCSRRHKRVSALQLQNQDLGGTLGPTLGNLTFLKKLNLTNVNLYGEIPREVGRLKRLQILCLDMNNVHGEVPMEITNCSKLEVVFLTHNNLTGKVPSWFGSMVHLTWLQLGANNLVGRIPPSLGNLSSLETLSLAYNHLEGNIPHILGRLSNLNYIFLGSNNLSGMIPPSLYNLSNIRHFDLGKNQLVGTLPSNIDHAFPNLQQFTIPLNQFTGTFPSSISNLSQLQVFDIGVNSFRGPIPLTLGRLNKLQVLIMDYNNLGSGQPHDLDFLSSLTNLTQLQRLSFEANNLGGVLPDLIGNLSTHLYLLDMWGSIPDSVGKLKNLARLNLQQNKLSGNIPSVIGNLTMLSEVYLGINELEGSLPFTLRYCSMMQKFVVDTNYLSGNIPNNTFGYQKGLITLDLSINALTGSVPSDFGNLKQLSILYLHTNNLSGEVPLELGACSALTDFWLTRNFFHGSIPSFFGSLRNLENLDFSINNFSGTIPNELENLTFLNYLNLSFNHLYGEVPIGGIFRNITAMSLIGNEDLCGGIPQLNLPPCPELLSHKHKSSFKVTLIIVISGVSASFLVFICICYLRKKPKTLSSSPSLEHRYLKVSYGELHQGTDGFSSSNLVGTGSFGSVYKGTLVQFERPIAVKVFFMAECKALGKIRHRNLLNILTCCSSLDYKGDDFKAIVFDFMSNGSLETLLHNNEEKESKNLNLNFEQRVNIALDVAFALDYLHNDSEEAIVHCDVKPSNVLLDDDMVAHLGDFGLARLLHGHGGIDCSSGDHVSSSAIKGTIGYLPPEYGAGGSVSAEGDMYSYGILLLEMITGKKPTDSIFGEGLSLHLFCNMAILEGISEIVDSRLLIPITEQEGRRVTRQQNMEDTIRECLVSFTRIGIACSEKVPSQRMGIKDVIMELHAIKQKLLS* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0478 961 SUPERFAMILY RNI-like 252 576 - -
Amo07g0478 961 PANTHER LRR RECEPTOR-LIKE KINASE 364 959 - -
Amo07g0478 961 PANTHER LRR RECEPTOR-LIKE KINASE 14 362 - -
Amo07g0478 961 Gene3D Phosphorylase Kinase; domain 1 623 730 - -
Amo07g0478 961 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 364 959 - -
Amo07g0478 961 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 14 362 - -
Amo07g0478 961 Pfam Leucine rich repeat N-terminal domain 14 55 IPR013210 -
Amo07g0478 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Amo07g0478 961 Gene3D Ribonuclease Inhibitor 12 173 IPR032675 -
Amo07g0478 961 SMART LRR_typ_2 373 397 IPR003591 -
Amo07g0478 961 SMART LRR_typ_2 470 494 IPR003591 -
Amo07g0478 961 SMART LRR_typ_2 542 567 IPR003591 -
Amo07g0478 961 SMART LRR_typ_2 178 202 IPR003591 -
Amo07g0478 961 SMART LRR_typ_2 226 250 IPR003591 -
Amo07g0478 961 SMART LRR_typ_2 329 352 IPR003591 -
Amo07g0478 961 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Amo07g0478 961 ProSiteProfiles Protein kinase domain profile. 659 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0478 961 Gene3D Transferase(Phosphotransferase) domain 1 731 960 - -
Amo07g0478 961 SUPERFAMILY L domain-like 42 358 - -
Amo07g0478 961 ProSitePatterns Protein kinases ATP-binding region signature. 665 688 IPR017441 GO:0005524
Amo07g0478 961 Pfam Protein kinase domain 661 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0478 961 SMART serkin_6 659 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0478 961 SUPERFAMILY Protein kinase-like (PK-like) 632 952 IPR011009 -
Amo07g0478 961 Gene3D Ribonuclease Inhibitor 326 592 IPR032675 -
Amo07g0478 961 Gene3D Ribonuclease Inhibitor 180 325 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0478 Amo-Chr7 5286008 5291196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0478 11 960 Receptor kinase-like Gene Family AT3G47570 42.216 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo07g0478 Pkinase 3.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0478 - - ahf:112766919 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0312 17 5008167 5011755 Amo07g0478 07 5286008 5291196 hybridization