Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0465 ATGGCAAAGGGTTGCACAAACAACGATTATGAGGAGGCTAGGAAACAAAGGCTAGAAGAAAACAAGAAGCGGTTTGAGGATTTGGGAATTTCAACAATTTCAAAGAATTTGTCTGAAATTGCGAGTTCTGTTAAGAAGTCTCCGTATCGTTCTCCTAAACCGAAATCAAAGAGGGATGTTGTAGTGGAACCAAGGCGATCTTCTCGTGTACGGAACCCAGTTCGTACATACCGTGAAGATGTTGACATAGAACTTCCAACTTTTCGGAAGAGGTCAAGGTCAAGTTCATCATGGGGAAGTTATATTGCAAGGCCACTAGATGAAATCAAGGAAGCTACAGATGAACAAAGAGCTCGAGCTTTGGAGGCTGCGGAGAAACTCCAAAGCAATTTGCAGTCTGAGAATCCATCATTTATTAAGTCGATGGTCCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTTGAGATTTTGTGCAAAACATCTCCCCAAAACTGTATGTAACATGATTTTAGAGGATGAAACTGGTAAAGAATTTGAGGCTGTTTTCATTGGCAATAGAAGTGGACTTAGTGGTGGCTGGAGAGGATTTGCATTGGAGCATAAGTTGGATGATGGTGATGCACTTGTTTTTGAATTGACTGAAAAAACAAGGTTTAAGATTTATAGAATTAAAGCATTTCCAGATTCAGCTGAAGAATATGAAAAACAGATTTTGAAGGAAGAAGGAAACAAACGTGCAAAGAAAGCACCGAAAGCTAATAGCAACTCCGAATCAGAATTCAACAAGACAAAAAACCCAAAAAAGGCCATTGCAGATAAAACTAATGAAGTAGAGAGTTCTAAGGATAACCTGCCAGAAAGTAACATTGATACTGAAGTTAAACCACAGGAGGTGAAGCTAAGTTATAGAACTAGGTTTACTCGGAAGAAAGTGCAAGATAAATCTAAAGGGGGAACACAAGTTGAAAATGGAGAATCAAAGGAGGCCATGAAGCCTAAATCTCAAGGAAACAAGACAAAAAAGTCAAAAGAAAGTGTTGATCATAAAATCGATAACTCGGACAATACTCAACAGGTTCTTTCCAAAAATAACCCTGTCGGACCAAAAGGTGCGAGCCTAAGCAATGAAGATGGGATTGTTCAGGATGGTGGACCAGTTGAAGAAAAAAGCAAAAGTGTTTCAAAACCTAGAAAAATGCGAGCTCCAAAGCTTTTCAGAAAGAGAGTATAG 1239 0.3931 MAKGCTNNDYEEARKQRLEENKKRFEDLGISTISKNLSEIASSVKKSPYRSPKPKSKRDVVVEPRRSSRVRNPVRTYREDVDIELPTFRKRSRSSSSWGSYIARPLDEIKEATDEQRARALEAAEKLQSNLQSENPSFIKSMVRSHVYSCFWLGLPLRFCAKHLPKTVCNMILEDETGKEFEAVFIGNRSGLSGGWRGFALEHKLDDGDALVFELTEKTRFKIYRIKAFPDSAEEYEKQILKEEGNKRAKKAPKANSNSESEFNKTKNPKKAIADKTNEVESSKDNLPESNIDTEVKPQEVKLSYRTRFTRKKVQDKSKGGTQVENGESKEAMKPKSQGNKTKKSKESVDHKIDNSDNTQQVLSKNNPVGPKGASLSNEDGIVQDGGPVEEKSKSVSKPRKMRAPKLFRKRV* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0465 412 MobiDBLite consensus disorder prediction 244 412 - -
Amo07g0465 412 SUPERFAMILY DNA-binding pseudobarrel domain 131 226 IPR015300 -
Amo07g0465 412 MobiDBLite consensus disorder prediction 264 319 - -
Amo07g0465 412 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 242 IPR044837 -
Amo07g0465 412 ProSiteProfiles B3 DNA-binding domain profile. 138 229 IPR003340 GO:0003677
Amo07g0465 412 Coils Coil 110 130 - -
Amo07g0465 412 CDD B3_DNA 136 224 IPR003340 GO:0003677
Amo07g0465 412 MobiDBLite consensus disorder prediction 329 354 - -
Amo07g0465 412 Coils Coil 8 28 - -
Amo07g0465 412 MobiDBLite consensus disorder prediction 53 68 - -
Amo07g0465 412 MobiDBLite consensus disorder prediction 41 68 - -
Amo07g0465 412 Pfam B3 DNA binding domain 138 222 IPR003340 GO:0003677
Amo07g0465 412 MobiDBLite consensus disorder prediction 355 373 - -
Amo07g0465 412 SMART B3_2 138 232 IPR003340 GO:0003677
Amo07g0465 412 Gene3D - 112 229 IPR015300 -
Amo07g0465 412 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 4 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0465 Amo-Chr7 4655973 4665002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0465 10 228 B3 DNA Binding Superfamily AT5G58280 51.613 9.93e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo07g0465 B3 2.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0465 - - lang:109355714 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0667 17 14737678 14747011 Amo07g0465 07 4655973 4665002 hybridization