Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0442 ATGGCGTACAAAGTGGACCATGAATACGACTACCTCTTCAAGGTTGTGTTGATTGGGGACTCTGGGGTTGGAAAATCCAATATCCTTTCCAGGTTTACGCGCAACGAGTTTTGCTTGGAGTCCAAGTCTACCATTGGTGTTGAATTCGCCACCAGAACATTGCAGGTGGAAGGGAAGACTGTAAAGGCACAAATATGGGACACTGCAGGGCAAGAGAGGTATAGAGCCATCACAAGTGCATACTACAGAGGAGCAGTTGGTGCTCTCTTGGTGTATGACATTACCAAGAGGCAAACATTCGACAATGTCCAGCGATGGCTTCGCGAGCTAAGGGACCACGCCGACTCCAACATTGTTATCATGATGGCCGGAAACAAATCCGACCTTAATCATCTGAGAGCAGTGTCTACTGAAGATGCTGAAAGTTTGGCTGAAAAAGAAGGACTATCTTTTCTTGAGACTTCAGCATTGGAAGCCTATAATGTTGAGAAGGCATTCCAAACCATATTGTTTGATATATATCACATTATAAGTAAAAAGGCGCTCGCGGCGCAGGAAGCCACTTCTGCCGGTGTTCCTCAGGGAACCACCATTAATGTCGCGAACACGGCCAATAATGCAGAGAGTTCAAGGTGGAACTACACGTCTCTTACCATAAAAAGCACCAAACCACCCTATCATTACTCCTTTCTAGCAAAGAGCTCTTCACAACTAGAACATTACCCTGCAAGCTTTCACAATCTTCTTCTTCCACCCTATTTGGTGGATCAAAATCATCATGTGCCCCAAGAACCATGCAGTGATGTTAGAAACATTGGTCCTGTGGTTGTTCCTTTTACAGGGTATGCTTCCATATTGAAGAGATCAAGGTTTCTGAAACCAGCTCAGCAGATTCTTGAAGACATGTGTGGCAGTGTTTTGAATCCTCCACCAAGATTGAATGAAAGTGGTGATGATCATGAAGAAGATCCCATCATTGGAACTAATGGTAGGGATGGAGTTCAGCATCATTGTAGGGATTCTGTACTTGGTTGCATGTTAGATGAGAAAGTAGCTGGGCTTGGAAATGCCACTCCTTACATATCCTTTGGAATCAAATCCATTTCCAAGCATTTTGGAAGTTTGAAACATGCTATCTATGATCAACTTCAGTTCACAATGAAGAACACTACTCCTGCATATAACAATGTTGTTGAAAAGGGTCTTCAATCAGTGAAAAGCTTACACTCAGTTCAACCTGTTTTGAGATCCCATAGAGGGCTTCCGGATCATGCTGTAGCTTTGTTGAGGAGATGGCTCTTTGAACACTTCTTACACCCGTATCCTACTGATTCTGAAAAGGATACATTGGTTCAACAGACTGGCCTTTCAAGATGTCAGGTTTCAAATTGGTTCATCAATGCAAGAGTAAGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGAATGGGGAACAGAAGGCTCAAGAATCAGAAGTGATCCATCACGCAAGGAAGCCCATTATTGGCCCTTAA 1515 0.437 MAYKVDHEYDYLFKVVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAESLAEKEGLSFLETSALEAYNVEKAFQTILFDIYHIISKKALAAQEATSAGVPQGTTINVANTANNAESSRWNYTSLTIKSTKPPYHYSFLAKSSSQLEHYPASFHNLLLPPYLVDQNHHVPQEPCSDVRNIGPVVVPFTGYASILKRSRFLKPAQQILEDMCGSVLNPPPRLNESGDDHEEDPIIGTNGRDGVQHHCRDSVLGCMLDEKVAGLGNATPYISFGIKSISKHFGSLKHAIYDQLQFTMKNTTPAYNNVVEKGLQSVKSLHSVQPVLRSHRGLPDHAVALLRRWLFEHFLHPYPTDSEKDTLVQQTGLSRCQVSNWFINARVRIWKPMVEEMHMNGEQKAQESEVIHHARKPIIGP* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0442 504 CDD homeodomain 416 476 IPR001356 GO:0003677
Amo07g0442 504 Pfam Ras family 14 173 IPR001806 GO:0003924|GO:0005525
Amo07g0442 504 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Amo07g0442 504 Gene3D - 5 211 IPR027417 -
Amo07g0442 504 SMART prehox3 280 381 IPR006563 -
Amo07g0442 504 PANTHER - 1 207 - -
Amo07g0442 504 SMART ran_sub_2 18 217 - -
Amo07g0442 504 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 207 - -
Amo07g0442 504 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Amo07g0442 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Amo07g0442 504 SMART rab_sub_5 13 176 - -
Amo07g0442 504 ProSiteProfiles small GTPase Ras family profile. 1 249 IPR001806 GO:0003924|GO:0005525
Amo07g0442 504 SMART ras_sub_4 10 176 - -
Amo07g0442 504 PRINTS Transforming protein P21 ras signature 13 34 - -
Amo07g0442 504 PRINTS Transforming protein P21 ras signature 151 173 - -
Amo07g0442 504 PRINTS Transforming protein P21 ras signature 54 76 - -
Amo07g0442 504 PRINTS Transforming protein P21 ras signature 36 52 - -
Amo07g0442 504 PRINTS Transforming protein P21 ras signature 116 129 - -
Amo07g0442 504 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Amo07g0442 504 CDD Rab11_like 10 174 - -
Amo07g0442 504 SMART arf_sub_2 1 185 - -
Amo07g0442 504 Gene3D - 418 495 - -
Amo07g0442 504 ProSiteProfiles 'Homeobox' domain profile. 412 475 IPR001356 GO:0003677
Amo07g0442 504 Pfam Homeobox KN domain 432 471 IPR008422 GO:0003677|GO:0006355
Amo07g0442 504 SMART HOX_1 415 479 IPR001356 GO:0003677
Amo07g0442 504 ProSiteProfiles small GTPase Rab1 family profile. 8 220 - -
Amo07g0442 504 SUPERFAMILY Homeodomain-like 419 482 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0442 Amo-Chr7 4324202 4329914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0442 341 482 Homeobox Transcription Factor Family AT5G02030 50.303 6.43e-43 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo07g0442 Ras 1.5e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0442 K07904 - adu:107457744 572.778