Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo07g0422 | ATGTCAATGTTGGTTACTGAGGACAACAACAACAACAACAATAATAAGCCTCATGTTGTTGTTGACGTAGACAATAATGTCTCTCAAGGTAGTACTAGTAGCTGTGTCGGCAATGAAGGTTGTGCTTCTTCTGAGACAAGTGAGGAACAACAACAAAGTAATTCCCATGATTCTGGTTCCGAGATTGTTGCTGGAGCAATTGAGAAAGAGAGAGGGTCTTCAGTTTCATCAGATCAGTGTTCTGTGGAGCTTGTGGATCTGGAGAGTGATGTGGATAAGGTACAGCACTTAGATCATGATAATAATAATAATAAGGTGGAGAGGGATTGCAGGATTTGTCACCTAAGCATGGATATGACCAACCATGAATCTGGTGGGTCCCCCATTGAACTTGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCACATAAACAATGTGCTGAGGCTTGGTTCAAGATCAAAGGCAACAAAACTTGTGAAATTTGTGGATCAATTGCACACAATGTAGCCGGCACAATCGAAGTTCAAATGACAGAACAGTGGAATGACTCCAATGATGCTTCCATGGCTCCACCAACCGGGCCTGCACCCCCGGCCGGCGAAACTCGAAACTTCTGGCAGGGACATCGTTTTTTGAATTTCCTACTAGCTTGTATGGTCTTTGCATTTGTCATATCCTGGCTTTTTCACTTCAATGTGCCCTCATGA | 708 | 0.435 | MSMLVTEDNNNNNNNKPHVVVDVDNNVSQGSTSSCVGNEGCASSETSEEQQQSNSHDSGSEIVAGAIEKERGSSVSSDQCSVELVDLESDVDKVQHLDHDNNNNKVERDCRICHLSMDMTNHESGGSPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGTIEVQMTEQWNDSNDASMAPPTGPAPPAGETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo07g0422 | 235 | MobiDBLite | consensus disorder prediction | 25 | 59 | - | - | |
| Amo07g0422 | 235 | Pfam | RING-variant domain | 110 | 162 | IPR011016 | GO:0008270 | |
| Amo07g0422 | 235 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Amo07g0422 | 235 | PANTHER | ZINC FINGER, RING-CH-TYPE | 21 | 235 | - | - | |
| Amo07g0422 | 235 | SMART | ringv_2 | 109 | 163 | IPR011016 | GO:0008270 | |
| Amo07g0422 | 235 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 21 | 235 | - | - | |
| Amo07g0422 | 235 | SUPERFAMILY | RING/U-box | 105 | 165 | - | - | |
| Amo07g0422 | 235 | CDD | RING_CH-C4HC3_MARCH | 110 | 163 | - | - | |
| Amo07g0422 | 235 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 102 | 169 | IPR011016 | GO:0008270 | |
| Amo07g0422 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 171 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo07g0422 | Amo-Chr7 | 4067992 | 4071024 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo07g0422 | 16 | 235 | C3H Transcription Factor Family | AT5G05830 | 53.394 | 2.06e-66 | 202 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo07g0422 | - | - | adu:107457785 | 458.759 |