Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0419 ATGGCTAAGAAGCGAAAGGTTCGACCTTCCGAGCCCGAACCCCCCAAACAAGAGCAAGAGCAAGAGCAAGAGCTTCAACAACAACAGCCACCACACGAAGAACTAACCTTAGATCAACAACAAAGCATGACCATCGATGACGCAGCGCCACAACAAGACCAACCTCAAAACGACGTCGCAATAGAAGAAGAGCAAAACAACGAAGGAGAAGGAGAAGAAGAAGCAGAAGAAGAACAGCAACAGGAGGATCAGCAGCAACAACAGCAAGGAGGGGGAGAAACCCTAGAAAGCCAGGAAGAGCAGATTCAACAGCAGGCTTCGGGTTCGGATTCGGTTCGGGCCGAGGCTAACGGCTCCGAGCAGCAACAGGAAGAGGAGGACCTCGATTTGGAAGACGAGCCAATCGAGAAGCTTCTAGAACCCTTCACGAAGGAGCAGCTACACTCCCTTGTCAAGCAAGCCGTCGAGAAGCACCCCGATTTCTCCGAAACCGTTCGCCAGCTGGCAGATGTGGACCCCGCACACCGGAAGATCTTCGTCCATGGGCTTGGCTGGGACACTACCGCAGAAACCCTAACCGCCGTGTTCGGAAAATACGGCGAAATTGAAGACTGCAAGGCCGTGACGGACAAAATCTCCGGAAAATCGAAGGGATACGCGTTCATCCAATTCAAGCACCGCGCTGGAGCGCGAAGGGCGCTTAAGCAGCCGCAGAAGAAGATTGGGAACAGAACAACTTCGTGCCAGTTGGCCTCTGCGGGACCTGTTCCGTCGCAGCAGGCGGCCGCGCCGGGTGCCCCGGTTGTGTCAGAGTATACACAGAGGAAGATCTTTGTTAGCAATGTGAGTGCGGAGATTGATCCTCAGAGGCTTCTGGAATTCTTCAAGCAGTTCGGGGAGATTGAGGATGGGCCTCTTGGGATTGACAAGCAGACAGGGAAGCCTAAAGGGTTTGCTCTTTTCGTGTACAAAACAGTTGAGAGTGCGAAGAAGGCGTTGGAGGAGCCAAACAAGAACTTTGAAGGGCACACCCTTTATTGCCAGAAGGCTGTTGATGGTCCCAAAGGGTTCAATAAGGGTGGATTTCATCAGCAGCAGCATCACCATCAACAGCACTATCAGCACCAATCACATCACCATCATCAGGGTCACTTTCATAGGAAGGATAAGAACAAGTATTCCGCTGGTGGGCCTGCACATGGCGGTGGTGCTGGTCACTTGATGGCGCCGTCGGCTCCAGGGCCTGCTGTTGGAGGTTACAATCCTGGTGTGCCACCTGCTGCTGCGGCGCAGGGTCTCAACCCTGCACTTGGGCAGGCGCTGACGGCGTTGCTTGCTAATCAGGGTGCCGGATTGGGACTTGGGAACCTGCTTGGAGGGATCGGTGGTGCTCCTGTGAACCAGCCTGGTCCACCTGCTGGTGGATATGGGACTCAGCCAGCTATGGGATATGGGAACCAGCCGGGGATGCAGCCGCAGTACCAGAATCCTCAGATGGGGCAGAGTAGTGGGGTTAGGCCTCACCCCGGTGCTGGCGCACCTTACATGGGTCATTAG 1557 0.5478 MAKKRKVRPSEPEPPKQEQEQEQELQQQQPPHEELTLDQQQSMTIDDAAPQQDQPQNDVAIEEEQNNEGEGEEEAEEEQQQEDQQQQQQGGGETLESQEEQIQQQASGSDSVRAEANGSEQQQEEEDLDLEDEPIEKLLEPFTKEQLHSLVKQAVEKHPDFSETVRQLADVDPAHRKIFVHGLGWDTTAETLTAVFGKYGEIEDCKAVTDKISGKSKGYAFIQFKHRAGARRALKQPQKKIGNRTTSCQLASAGPVPSQQAAAPGAPVVSEYTQRKIFVSNVSAEIDPQRLLEFFKQFGEIEDGPLGIDKQTGKPKGFALFVYKTVESAKKALEEPNKNFEGHTLYCQKAVDGPKGFNKGGFHQQQHHHQQHYQHQSHHHHQGHFHRKDKNKYSAGGPAHGGGAGHLMAPSAPGPAVGGYNPGVPPAAAAQGLNPALGQALTALLANQGAGLGLGNLLGGIGGAPVNQPGPPAGGYGTQPAMGYGNQPGMQPQYQNPQMGQSSGVRPHPGAGAPYMGH* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0419 518 Coils Coil 61 81 - -
Amo07g0419 518 MobiDBLite consensus disorder prediction 365 388 - -
Amo07g0419 518 MobiDBLite consensus disorder prediction 1 131 - -
Amo07g0419 518 MobiDBLite consensus disorder prediction 63 81 - -
Amo07g0419 518 MobiDBLite consensus disorder prediction 1 20 - -
Amo07g0419 518 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 505 - -
Amo07g0419 518 SMART rrm1_1 177 249 IPR000504 GO:0003723
Amo07g0419 518 SMART rrm1_1 276 348 IPR000504 GO:0003723
Amo07g0419 518 MobiDBLite consensus disorder prediction 21 62 - -
Amo07g0419 518 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Amo07g0419 518 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 345 IPR000504 GO:0003723
Amo07g0419 518 MobiDBLite consensus disorder prediction 356 410 - -
Amo07g0419 518 CDD RRM_RBM24_RBM38_like 275 350 - -
Amo07g0419 518 SUPERFAMILY RNA-binding domain, RBD 271 368 IPR035979 GO:0003676
Amo07g0419 518 Gene3D - 263 397 IPR012677 -
Amo07g0419 518 Gene3D - 146 262 IPR012677 -
Amo07g0419 518 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Amo07g0419 518 CDD RRM_RBM24_RBM38_like 176 251 - -
Amo07g0419 518 SUPERFAMILY RNA-binding domain, RBD 167 257 IPR035979 GO:0003676
Amo07g0419 518 MobiDBLite consensus disorder prediction 484 503 - -
Amo07g0419 518 MobiDBLite consensus disorder prediction 469 518 - -
Amo07g0419 518 MobiDBLite consensus disorder prediction 82 118 - -
Amo07g0419 518 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 352 IPR000504 GO:0003723
Amo07g0419 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0419 Amo-Chr7 4034465 4039185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0419 271 354 C2H2 Transcription Factor Family AT2G19380 32.143 2.29e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0419 K12741 - gmx:100792637 565.459