Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0380 ATGTTTCCCATTTCAAGGATCCTATGCAACAAAAATGCCACCAATATTGTTGAGATAAGGCTTGAGAATTTGAACCTTAGTGGCACAATTGATGCTGATTCTCTATGCAAGCTTCAAAAATTAAGGGCTCTTAGCTTAGCCAACAACAACATCAAAGGCAAAATCCCACACTCAATTTTGCATTGTACAAGGTTGATGTACCTAAATCTTACAAGAAATCAATTGAGTGGGAATGTACCTACTAGATCCTTAGCCAAGTTGAAATTCCTCAAAAAATTGGACATATCCAACAACAATTTCATCCCAATTAAGCATAATAAGTTCTCTACATATTATGTGACACCAAATATCAAAGATGGGACAAAGGGTAGTATTGTAAATTCATCACCATATAATGATACCTCAAATAATGGTAAAGAAGGATCATCATCTCCAATAATATCTATGAAATTGTTAATACCATTGATCTTAGGGCTTGTAATTCTTTTAATATCACTTATCTTTGCCGCCAAGAAATTACCAAAGCTATGTAGAGAGGGAATAATAAAAGTACTAATAAGAAGTCATCAAGTTTCTCCATCATCACAAAAGTCCATAACAAGTGATCAAATGGTGAAGAAGGGTGGTTTAGAAGATCATTCACCATCACTAGGGCTTGTGTTCTTTGTTGAAAAAGAAGAGAGGTTCACCATGGAGGACTTGCTTCGCGCCGCGGCGGATCTAAGGAGTGAGAGCTTTTGTAGCAGCCTATACAAGGTGAAGCTTAATAATGTGGAGAATGATGTTCACTATGCTGTGAAGAGGTTAAAGAATGTTCAAGTTTCTTGTGAAGATGAGTTTGGAGAAACATTGAGGAAGATAAGCAAATTGAAGCATCCAAATATTCTTCCACTTGTTGGCTACCGTTCTACTAGTGAAGAGAAGCTTGTCATCTACAAATATCAAACCAATGGAAGCCTCCTCAATCTCTTGAATGGTAACTATATTTTAGTTAATATAACATTACAATTTTTTCTCTATTTTTTATTTCTTTCAAATGTTGCATTGCATAATAATAACCAACCATCAAACATACTCCTCAATGAAAACAATGAACCACTCATAAGTGAGCATGGCCTAACAAAATTCATGGATCCAAATAGGTCCGGGTTCCTCCTTTCCTCTCAGGGATATACCGCGCCAGAAAAATGCATTTCTGAAAAATCTGATGTGTATAGTTTTGGCGTGATCTTGCTCGAGTTATTAACCGGCAAGAGCATAGAGAAAACCCGAATCGATCTCGCGAGATGGGTTCGATCTATGGTAAGGGAAGAATGGACCGGAGAAGTGTTTGATAAAAAAGTTGGGCCAAATGAACATCAATGGGCTTTTCCAATATTGAATGTTGCCCTAACTTGTGTTACAAGGTTCCAAGAAAATAGGCCAACCATGGGAGAGATCTTAGAGAGGATTGAAGAGGTTATGGATGAACAAGAACATCAAGAACAAATTGCTTCTTCAAAATGTTGCTCTAATGGATCCAAAGATTGTTGTTCACTCCACAAAATCATTCCTGATACATGGGATTCACCAGGATCCAATTACTAA 1587 0.3699 MFPISRILCNKNATNIVEIRLENLNLSGTIDADSLCKLQKLRALSLANNNIKGKIPHSILHCTRLMYLNLTRNQLSGNVPTRSLAKLKFLKKLDISNNNFIPIKHNKFSTYYVTPNIKDGTKGSIVNSSPYNDTSNNGKEGSSSPIISMKLLIPLILGLVILLISLIFAAKKLPKLCREGIIKVLIRSHQVSPSSQKSITSDQMVKKGGLEDHSPSLGLVFFVEKEERFTMEDLLRAAADLRSESFCSSLYKVKLNNVENDVHYAVKRLKNVQVSCEDEFGETLRKISKLKHPNILPLVGYRSTSEEKLVIYKYQTNGSLLNLLNGNYILVNITLQFFLYFLFLSNVALHNNNQPSNILLNENNEPLISEHGLTKFMDPNRSGFLLSSQGYTAPEKCISEKSDVYSFGVILLELLTGKSIEKTRIDLARWVRSMVREEWTGEVFDKKVGPNEHQWAFPILNVALTCVTRFQENRPTMGEILERIEEVMDEQEHQEQIASSKCCSNGSKDCCSLHKIIPDTWDSPGSNY* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0380 528 Gene3D Phosphorylase Kinase; domain 1 206 314 - -
Amo07g0380 528 Gene3D Transferase(Phosphotransferase) domain 1 316 509 - -
Amo07g0380 528 Gene3D Ribonuclease Inhibitor 3 117 IPR032675 -
Amo07g0380 528 SUPERFAMILY Protein kinase-like (PK-like) 249 493 IPR011009 -
Amo07g0380 528 Coils Coil 481 501 - -
Amo07g0380 528 Pfam Protein tyrosine and serine/threonine kinase 254 483 IPR001245 GO:0004672|GO:0006468
Amo07g0380 528 PANTHER TYROSINE KINASE FAMILY PROTEIN 6 521 - -
Amo07g0380 528 Pfam Leucine rich repeat 40 100 IPR001611 GO:0005515
Amo07g0380 528 ProSiteProfiles Protein kinase domain profile. 235 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0380 528 SUPERFAMILY L domain-like 12 107 - -
Amo07g0380 528 PANTHER OS05G0588300 PROTEIN 6 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0380 Amo-Chr7 3566949 3570021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0380 7 508 Receptor kinase-like Gene Family AT5G05160 30.912 1.25e-56 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo07g0380 PK_Tyr_Ser-Thr 2.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0380 - - gmx:100807491 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0527 11 9191093 9195545 Amo07g0380 07 3566949 3570021 PCT
Amo01g0192 01 3288328 3293060 Amo07g0380 07 3566949 3570021 PCT
Amo07g0380 07 3566949 3570021 Amo11g0527 11 9191093 9195545 PCT
Amo07g0380 07 3566949 3570021 Amo01g0192 01 3288328 3293060 PCT