Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0363 ATGGAATCGGATCTTGGAAAGCTCTTCATTGGGGGGATTTCATGGGACACTGATGAGGAACGCCTCAAGGAATATTTTGGGAAATTTGGTGAGGTGATAGAAGCTGTGATCATGAGGGATCGGACAACGGGTCGTGCTCGTGGATTCGGCTTTATTGTCTTTGCTGATCTTGCTGTTGCAGAAAGAGTAATTATGGATAAACATGTAATCGATGGCCGCACGGTTGAAGCAAAGAAGGCTGTTCCCAGAGATGATCAGCAAGCTATAAATAGGCAGTCTGCTAGCATGCAGGGATCTCCTAGTCCTGGTCGCACGAAGAAAATCTTCGTTGGAGGTTTACCATCAACGATCACGGAAAGTGATTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTGATGTATGATCACAATACTCAGAGGCCAAGAGGATTTGGCTTCATCACTTATGATTCGGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGGAAGTTGGTTGAGGTCAAGAGGGCAGTTCCGAAAGATCTTTCTCCTGGACCCAATCGGAGCCCATTGATAGGATATAACTATGGTTTGAATAGGACAAGTAGCTACCTAAACAGTTATGCTCAGGGTTTTAATATTAATCCGATAGGAGGCTATGGCGTAAGGATGGATGGTAGATTTAGTCCACTTTCTAGTGGTAGAAGCAGTTTTACCCCATTTGGATCTAGTGGTTATGGAATGGGAGTGAATTTGGAATCAGCATTGAGTCCAAACTATGGAGGAACTTCCAATTATGGGGGAAATATAGGGTACGGTCGAATATTTAGTCCTTTCTATAGTGGCAATTCAAGCAGGTACACTACTCCTATTGGCTTTAGTGGGGGCAATGCAAGAAGCGACACTCTTACGAACTCAGCTTCTAGGAATGTCTGGGGAAATGGTGGCCTGAATACTACGACTAATAACCCCGTCAGCCCTGGTGCTTACTTGGGATCAGGAAGTGGGGCTTTCGGTGTTTCAATTGGAAATAGTGGTACCAATTGGGGTCCATCAGTTCCAACGCAGGGTGGGGGGGCTGCTTCCGGCTATGCTACTTGGAGCAATGTTTATGCCGGTGGAGATAGTAGCATAGGATTAGGAGGAGGAGGAGGGTATGGAAGGAACACCGGCACAAATGCGACCCAGTCCTCTACATTTGCTGCACCAAACAGTGTTTATGATGGACCCTATGGGGAGTTATACCGCAGTGGTTCTGCTTACAATGACTCTACTTGGCGGTCCGCTGCTTCTGAGGTAGATGGTTCTGGTGCATTTGGTTATGGTCTTGGCGGCATTGTTTCGGATGATCCAGTGAAGAGCTCTGAGGGTTTTATTGGGAATTACAATGTAACAAGTAGACAATCTAATAGAGGAATTGCTGCTTAG 1440 0.4521 MESDLGKLFIGGISWDTDEERLKEYFGKFGEVIEAVIMRDRTTGRARGFGFIVFADLAVAERVIMDKHVIDGRTVEAKKAVPRDDQQAINRQSASMQGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKLVEVKRAVPKDLSPGPNRSPLIGYNYGLNRTSSYLNSYAQGFNINPIGGYGVRMDGRFSPLSSGRSSFTPFGSSGYGMGVNLESALSPNYGGTSNYGGNIGYGRIFSPFYSGNSSRYTTPIGFSGGNARSDTLTNSASRNVWGNGGLNTTTNNPVSPGAYLGSGSGAFGVSIGNSGTNWGPSVPTQGGGAASGYATWSNVYAGGDSSIGLGGGGGYGRNTGTNATQSSTFAAPNSVYDGPYGELYRSGSAYNDSTWRSAASEVDGSGAFGYGLGGIVSDDPVKSSEGFIGNYNVTSRQSNRGIAA* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0363 479 MobiDBLite consensus disorder prediction 81 105 - -
Amo07g0363 479 Gene3D - 86 193 IPR012677 -
Amo07g0363 479 Gene3D - 6 85 IPR012677 -
Amo07g0363 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Amo07g0363 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 167 IPR000504 GO:0003723
Amo07g0363 479 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Amo07g0363 479 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 479 - -
Amo07g0363 479 MobiDBLite consensus disorder prediction 86 102 - -
Amo07g0363 479 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Amo07g0363 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Amo07g0363 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Amo07g0363 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 479 - -
Amo07g0363 479 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Amo07g0363 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Amo07g0363 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Amo07g0363 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0363 Amo-Chr7 3425594 3429308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0363 105 182 Eukaryotic Initiation Factors Gene Family AT1G49760 32.911 2.85e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0363 K14411 - gmx:100788515 794.653