Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo07g0349 | ATGGCATCTGCTTTAGACTCATGGGTGAAGGAATACAATGAAGCAGTGAAACTTGGTGATGATATTACAGCCATGATGTCCGGGCGGAACTCGGTTCCGTCGTCCGGGCCTGAAACCCTGCGTCACACATCTGCTATAAGAAGGAAGATTACAATATTGGGGACCAGACTTGATAGCTTGCAATCCCTTTTGTCTAAGCTTCCTGCAAAGCAAGCTATATCCGAGAAGGAGATGAATCGCCGCAAGGATATGGTTGCGAATTTGAGATCTAAAGTTAACCAAATGGCTTCCACTTTGAACATGTTGAACTTTGAAAATAGAGACCTTTTGCTTGGGCCAGAAACAAAGCCAGATGCCATGAGCAGAACAACTGGCCTGGACAACAACCAACTTGTTGGATTTCAACGGCAAATTATGAAAGAACAAGACAATGGCCTTGCAAAATTGGAGGAGACTGTACTAAGCACCAAACATATTGCACTTGCTGTCAATGAAGAGTTGGATCTACACACTAGACTTATTGATGACTTGGACCAACATGTAGATGTTACAAATTATCGGATGAGGTGGGTGCAGAAGAAATTGTCAATTGTAAATAAACGAACCAAGGGTGGTTGCTCCTGCTGGTGCTTACTTTTATCAGTGGTTGGCATTGTGGGTTTGCTTCTTGTCATTTGGATTTTGCTCGTTCATTTGTAA | 699 | 0.4292 | MASALDSWVKEYNEAVKLGDDITAMMSGRNSVPSSGPETLRHTSAIRRKITILGTRLDSLQSLLSKLPAKQAISEKEMNRRKDMVANLRSKVNQMASTLNMLNFENRDLLLGPETKPDAMSRTTGLDNNQLVGFQRQIMKEQDNGLAKLEETVLSTKHIALAVNEELDLHTRLIDDLDQHVDVTNYRMRWVQKKLSIVNKRTKGGCSCWCLLLSVVGIVGLLLVIWILLVHL* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo07g0349 | 232 | PANTHER | SYNTAXIN | 1 | 227 | IPR045242 | - | |
| Amo07g0349 | 232 | Pfam | SNARE domain | 173 | 224 | IPR000727 | - | |
| Amo07g0349 | 232 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 136 | 198 | IPR000727 | - | |
| Amo07g0349 | 232 | SUPERFAMILY | t-snare proteins | 30 | 100 | IPR010989 | GO:0016020|GO:0016192 | |
| Amo07g0349 | 232 | CDD | SNARE_Qc | 139 | 196 | - | - | |
| Amo07g0349 | 232 | SMART | tSNARE_6 | 131 | 198 | IPR000727 | - | |
| Amo07g0349 | 232 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 227 | - | - | |
| Amo07g0349 | 232 | Gene3D | - | 138 | 200 | - | - | |
| Amo07g0349 | 232 | SUPERFAMILY | SNARE fusion complex | 127 | 197 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo07g0349 | Amo-Chr7 | 3348001 | 3350673 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo07g0349 | 1 | 232 | SNARE and Associated Proteins | AT1G79590 | 66.953 | 3.75e-110 | 315 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo07g0349 | K08503 | - | gmx:100782666 | 335.495 |