Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0345 ATGGAAACGACGTCGCACGCGGACCTCCACCAACCACCGCTCACTCCTGCCTCCAATCTCCCCGTCGAGAACGGCGGACCTCGGGAATCACACCATGACGATGACCGCTGCGCCAAGAAGCCTAAGCTCGAGGAACATGTTGACGATGGTGGTGGTGGTGGTGCTGGAGGAGGAGGAGGGGAATTGAAGAGAGTGGCGGAGATTGTGCTTGTTTTGTCGACGATGGCGACGATGCGGGCGGGTCGGAAACCTACCGACGTGGAGGTGGAGCTTATGAGGGAGGCTCGGAGCAAGCTCGCCGAGCTTTGCGTAGGGCTCGCGCCGAAGGATATCGTTGGGAGGGAAGCGATTGGGACGGTGATTGAGGATCTTGGATTGAACGGCAGGGTTAGGGATCAGAGGTTAGGGTTTCGAACTCCAAAGATGTCAATTGCTGAGAGGTATACGCATGCTAAGTGGAAGATGGAAGAAGCAAAGAGGTATGCTGCACCTTCTACAACGTACACATCTCAGCCTGTGCAACCAAGTACGAGTGTAACAGTTGACAACCGTGTGGCTCCACATGGTGTTCGTGTATTTCCACCTGATAATTCAAGCCACATAGCGATCCCTTCTTCGGCAACAACGGTGTCTATTCCTTCTCATGTTTCTGCAGGATCGTCTTCTACGTCGCAATATCAGGCGACTAGCAATGAAGTAAGACCACCTATGGTTTCTGGTGCAATACCTAGCACTCATCTTGGGAGAAATTCATCTCCGATGGTAGTGCCTAAACTTGAAAACCCACAGGTCAGAGTTGATGGAGGATCAAATGGGTCTTCTTATGTGCTTAGTATACCAGCAAATTCTTCAGCAAACCAGCCTTTGGCAAATGCTCCACCATGGTCAATACAGACTCAATCTGCGTCGTTAGCTAGAACAGCATTGGAAAACAAGGTGCCTGCTCATAACACTGTCAAGGTACAAGGAACAAGTGATGTAGCTTCTTCAAGGGCAGGTTCACAAATAACAGCAGATCAGAGCTTTAGGCCATTTATTACTCAAACAGCACCTGTAAACTTGTCTACTATGCAACAGTCTTTCCAGGGTATGAACGTTGCTCAGCCTCCTTCAATTCCTACTCATGCTGAAATTGCAAAGATTGTCCAGAAATTGTTACAACCAAAGCTTCCTGAGCATCCGACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAAGTGTGTGAACTCACTGTCAATGAGGTTGATACTGTGCTTCTCTGTGATGCTTGTGAAAAGGGATATCACTTGAAGTGTTTGCAGCCCTCGGTTTTAAGAGGAATTCATAATAGAGTGGATTGGCATTGCATGAGGTGTTTGAATTTAAGCGGTGGAAAGCCTATACCTCCAAAATATGGCCGTGTCATGAGATCATCAAACACACCACCGAAATTGCCCACTACGGTTGGAGTTCAGCAACCTTCTGAGAAGAAAACAGGGAGCTTAGATCCAAAGGCCAGCCAGCAGAATTTAACAACAAATGGGAGCACTGCTCCAATAGTTGCTACCAGCAATGTCAAAGTTGAGCCACCATCTGATTCAAAGACTCCTGGTACAAAGGATATACATGGTACCGGATCATCCAACACGGAACATATTGATCAGAAGCCTGACCCAAACATCTCTATGAAATCCCTTAATGCAGCTTCTGTTCCTTCCGTTGACTTTCCTGGTGAAAGTTCTGCTCAACAAATTAATCCTGAGCCTTCAACCTGTAAAGAGAGTTCAACCTCTAAAGAGTGTTTCGATTCCAAGACCCTTCCTAAATTATCTGAGCCAGGTGAATGTGACAATTTGCAATCATCACAAGACTTTCAAGCTGAGCAGAAAGTGTCACAGGGCAATGCTGTAGTATTATCGGATAAAAAAGTTGACAGTAGTTTAATGAGTAATGAACAAAAGGAATCACAATCAGGAGAAAGCTCAACTTATGATACCAAGCGAGATGGCCAAGATGTTGCACTAGCAAACTTTGATGGGAGTTCTGGAACTAATGCTGAAGTTAGACAAGATAGCTCGCAAGTTGTAGAATGGATTGGTGATGTTATACACGTTGTTGATGAGAAAAAGTTTTACAAATCTTGCTGTGTTGATGGAGTGACATATAGGCTTCATAGTCATGCTCTTCTCCCATCTGGCCATGGCAAATTAGCACCTTCTAAACTTCAGTCTATGTGGGAAGACTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACGAAATGCTACTTTCCTGGTGATTTGCCTGGGAACATTGGTCATCCGTGTATATCCGAAGTTAATGAGGTTTATGAATCTAATAGTGAAAGAACTGAAAAGGCTAGCTCTATTCGAGGTCCATGTGAAGTCCTTCCATCTGATAAATTTAATCAAGAAAACGACAGACGAAATCAGTTGGGAATTGAGGCAAATGCTAGAATCCAGCCACTTTTTGTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTTATTTCAGCCTGTTACCAGTTGA 2541 0.4518 METTSHADLHQPPLTPASNLPVENGGPRESHHDDDRCAKKPKLEEHVDDGGGGGAGGGGGELKRVAEIVLVLSTMATMRAGRKPTDVEVELMREARSKLAELCVGLAPKDIVGREAIGTVIEDLGLNGRVRDQRLGFRTPKMSIAERYTHAKWKMEEAKRYAAPSTTYTSQPVQPSTSVTVDNRVAPHGVRVFPPDNSSHIAIPSSATTVSIPSHVSAGSSSTSQYQATSNEVRPPMVSGAIPSTHLGRNSSPMVVPKLENPQVRVDGGSNGSSYVLSIPANSSANQPLANAPPWSIQTQSASLARTALENKVPAHNTVKVQGTSDVASSRAGSQITADQSFRPFITQTAPVNLSTMQQSFQGMNVAQPPSIPTHAEIAKIVQKLLQPKLPEHPTWTPPSRDYMNKALTCQVCELTVNEVDTVLLCDACEKGYHLKCLQPSVLRGIHNRVDWHCMRCLNLSGGKPIPPKYGRVMRSSNTPPKLPTTVGVQQPSEKKTGSLDPKASQQNLTTNGSTAPIVATSNVKVEPPSDSKTPGTKDIHGTGSSNTEHIDQKPDPNISMKSLNAASVPSVDFPGESSAQQINPEPSTCKESSTSKECFDSKTLPKLSEPGECDNLQSSQDFQAEQKVSQGNAVVLSDKKVDSSLMSNEQKESQSGESSTYDTKRDGQDVALANFDGSSGTNAEVRQDSSQVVEWIGDVIHVVDEKKFYKSCCVDGVTYRLHSHALLPSGHGKLAPSKLQSMWEDCKTGLKWVKVTKCYFPGDLPGNIGHPCISEVNEVYESNSERTEKASSIRGPCEVLPSDKFNQENDRRNQLGIEANARIQPLFVCRWFYDEIKKLFQPVTS* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0345 846 Gene3D - 687 846 IPR043151 -
Amo07g0345 846 MobiDBLite consensus disorder prediction 478 602 - -
Amo07g0345 846 ProSiteProfiles BAH domain profile. 718 845 IPR001025 GO:0003682
Amo07g0345 846 SMART PHD_3 409 458 IPR001965 -
Amo07g0345 846 ProSiteProfiles Zinc finger PHD-type profile. 407 460 IPR019787 -
Amo07g0345 846 MobiDBLite consensus disorder prediction 26 49 - -
Amo07g0345 846 MobiDBLite consensus disorder prediction 640 666 - -
Amo07g0345 846 CDD BAH 717 845 - -
Amo07g0345 846 MobiDBLite consensus disorder prediction 468 604 - -
Amo07g0345 846 ProSitePatterns Zinc finger PHD-type signature. 410 457 IPR019786 -
Amo07g0345 846 Gene3D - 345 460 - -
Amo07g0345 846 MobiDBLite consensus disorder prediction 640 658 - -
Amo07g0345 846 SUPERFAMILY FYVE/PHD zinc finger 400 465 IPR011011 -
Amo07g0345 846 MobiDBLite consensus disorder prediction 1 59 - -
Amo07g0345 846 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 845 - -
Amo07g0345 846 Pfam PHD-finger 410 458 IPR019787 -
Amo07g0345 846 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 845 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo07g0345 PHD 9.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0345 - - aip:107609239 1667.9