Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0304 ATGGACAAACATTCTGGGGATTCTGCGCCAGCTCATGGTGCCACAGGTTCATCTGGGATTTCCTCACTTAGTGTTGGTAGAAAGGTGGGAAGCAGTGCATGGGGAATACCACGCGGCACTGCTGCATTTCATGCATCAAGTGACACTAGCTTGTTCTCCAGTTCGCTTCCTGTTCTTGGGCATGAAAAGTTAAATTTGACTGGTTCGGGACATTATGATCGATCTGCTGATGATAACTGGCCAAGATTAGGGAAAGTTCATAAAGATGATGTGGGGCAAGATGCACTTGAAGATATGGAAACAAAAGCAGTTGGAAAGATGCTTCCTGATGATGAAGATGAATTGTTAGCTGGGATAATGGAAGATTTTGACCTTACCAGGTTGCCGAGTCAGCTAGAGGATCTGGATGAGAATGATCTTTTTGGAAGTGTAGGAGGCTTTGAAATGGATTTTGAATCCCAAGAGAGCCTTGGTATTGGTATATCAAAGATGAGCTTATCCGATGGAGTTCCTTCAACGGCTATCGGTCAATATGCTGCACTGCCAAATGGCGTTGGAGCAGTGGCCGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACCTTGTTTGTGAGGAACATCAACAGTAATGTGGAGGATTCTGAATTAAGATTGCTATTTGAGCAATATGGGGATATCAGAACATTGTACACTGCTTGCAAGCATAGGGGTTTTGTAATGATATCTTACTATGACATTCGAGCTGCTCGCACAGCAATGCGTGCTTTGCAGAACAAGCCTTTGAGAAGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCTTCTGAAAAGGATATCAACCAAGGAACACTTGTAGTATTCAATTTGGATCCATCAGTATCAAATGATGATCTTCGCCAAATATTTGGGGCTTATGGAGAAGTCAAGGAGATTAGGGAAACACCACATAAAAGACACCATAAATTTATCGAGTTTTATGATGTTAGAGCAGCAGAGGCTGCTCTTAAAGCATTGAATAGAAGTGATATTGCTGGAAAACGTATCAAACTTGAACCCAGCCGTCCCGGTGGAGCACGTCGAAACTTGATGCAACAATTGAGTCAAGAGCTAGAGCAAGATGATGCTCGAACTTTCAGACATCATGTGGGTTCACCTGTAGCTAGTTCACCTCCCGGTAACTGGGCACAATTTGGTAGCCCGGTTGAACATAGTCCATTACATTCTTTTAGCAAAACCCCAGGTTTGAATATTGGCAGCCCAATGAATACCAACCAGATGTCTGGATTGGCTGCAATTCTTTCGCCACATGCATCAACCTCTTCAAAAATTGCACCAATTGGAAAAGACCCTGGAAGAACTAATAATCCAAATCCGATATTCGGAAGCTCTGGACCAATACAAGGAGCTGGCTTTCAGCATTCTATGTCCTTCCCTGATCAAAAAGTAACCGCAAGTCCTAGGCCTATATCTACTGTTGGCGAATCAAGTTCGAGTTCTTCGAGTATTGGAATGTTGTCTGGTCCTCAATTTTTGTGGGGAAGTCCAACTACCTACTCGGAACGTTCAAACACATCTGCTTGGTCTTCATCATCTCAGGGGCTTCCATTTAATTCTAGTGGACAAAGGCAGGGTTTCCCTTATACTAGTCGGCACAATTCTTTTCTTGGTTCTCACCTCCATCACCATGTTGGTTCTGCTCCATCTGGTCTTACTTTCGATAGGCAGTTTAGCTACTTTCCCGAGTCACATGAAACTTCAATCAAGAGCTCAAATGCATTTGGGAGTTTAAATCACGGTGATGGGAATTTCTTGATGAACATGGGTCCTCATGCATCTCTAGGAGCTGGTGTTGGCCTTTCAGGAAATGCAACCGAAATTGGTTCGCCTAATTTCAGAATGATGTCACCACTGCCTAGACATGGTTCATTGTTCCTTGGAAATGGTTCATATTCTGGACTAGGAGCAGCTAACTCTGAGTTGTTAACTGAACGTGGTAGAACTAGGCGACCTGATAATAATGGGAACCAAATTGATGGCAAGAAGCAGTACCAGCTTGATCTGGACAAAATTATGAGCGGGGAAGACACAAGGACTACATTAATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGCTCCTTGCTGCAATTGATGAGGATCACATGGGAAGCTATGACTTTTTGTATTTGCCGATTGACTTTAAGAACAAGTGTAATGTGGGCTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAGTGGGAAAAGTTCAACAGCGAAAAAGTTGCTTCACTTGCTTATGCGCGAATCCAAGGAAAGGGTGCACTTGTGACACATTTTCAGAATTCAAGCCTAATGAATGAGGATAAACGGTGTCGGCCAATTCTCTTCCATTCAGAGGGCCAAGAGATTGGTGACCAGGAACATTTCCTCTCAAGCAATTTGAATATATGTATTCGTCAACCGGATGGGTCTTACTCAGGTGATTTGTTGGAGAGCCCGAAGGGCAATTCGGATGAAAACTAG 2571 0.4302 MDKHSGDSAPAHGATGSSGISSLSVGRKVGSSAWGIPRGTAAFHASSDTSLFSSSLPVLGHEKLNLTGSGHYDRSADDNWPRLGKVHKDDVGQDALEDMETKAVGKMLPDDEDELLAGIMEDFDLTRLPSQLEDLDENDLFGSVGGFEMDFESQESLGIGISKMSLSDGVPSTAIGQYAALPNGVGAVAGEHPYGEHPSRTLFVRNINSNVEDSELRLLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDDARTFRHHVGSPVASSPPGNWAQFGSPVEHSPLHSFSKTPGLNIGSPMNTNQMSGLAAILSPHASTSSKIAPIGKDPGRTNNPNPIFGSSGPIQGAGFQHSMSFPDQKVTASPRPISTVGESSSSSSSIGMLSGPQFLWGSPTTYSERSNTSAWSSSSQGLPFNSSGQRQGFPYTSRHNSFLGSHLHHHVGSAPSGLTFDRQFSYFPESHETSIKSSNAFGSLNHGDGNFLMNMGPHASLGAGVGLSGNATEIGSPNFRMMSPLPRHGSLFLGNGSYSGLGAANSELLTERGRTRRPDNNGNQIDGKKQYQLDLDKIMSGEDTRTTLMIKNIPNKYTSKMLLAAIDEDHMGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILFHSEGQEIGDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNSDEN* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0304 856 Gene3D - 284 382 IPR012677 -
Amo07g0304 856 MobiDBLite consensus disorder prediction 1 25 - -
Amo07g0304 856 PANTHER PROTEIN MEI2-LIKE 2 12 854 - -
Amo07g0304 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 358 IPR000504 GO:0003723
Amo07g0304 856 Gene3D - 189 283 IPR012677 -
Amo07g0304 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 352 IPR000504 GO:0003723
Amo07g0304 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 266 IPR000504 GO:0003723
Amo07g0304 856 CDD RRM1_MEI2_like 199 275 IPR034453 -
Amo07g0304 856 SUPERFAMILY RNA-binding domain, RBD 702 786 IPR035979 GO:0003676
Amo07g0304 856 MobiDBLite consensus disorder prediction 524 552 - -
Amo07g0304 856 SUPERFAMILY RNA-binding domain, RBD 197 360 IPR035979 GO:0003676
Amo07g0304 856 MobiDBLite consensus disorder prediction 458 505 - -
Amo07g0304 856 MobiDBLite consensus disorder prediction 11 25 - -
Amo07g0304 856 Pfam RNA recognition motif 2 700 796 IPR007201 -
Amo07g0304 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Amo07g0304 856 MobiDBLite consensus disorder prediction 443 505 - -
Amo07g0304 856 CDD RRM3_MEI2_like 703 788 IPR034454 -
Amo07g0304 856 PANTHER RNA RECOGNITION MOTIF-CONTAINING 12 854 - -
Amo07g0304 856 SMART rrm1_1 201 269 IPR000504 GO:0003723
Amo07g0304 856 SMART rrm1_1 702 778 IPR000504 GO:0003723
Amo07g0304 856 SMART rrm1_1 286 354 IPR000504 GO:0003723
Amo07g0304 856 CDD RRM2_MEI2_like 284 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0304 Amo-Chr7 2828855 2834554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0304 195 393 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 1.51e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0304 - - gmx:100812324 1386.32