Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0303 ATGGCGGCAGCAGCAGCTCGTCCCATCGTCACCGTTCAAGCCCTTGAGGGCGACATGGCCACCGGCTCCGCCCCAACCGTACCACTTCCTGACGTCATGAAGGCCTCCATCCGCCCCGATATCGTAACCTTCGTCCACGACAACATCTCTAAGAACTCTCGCCAGCCCTACGCCGTCTCCCGTCGTGCCGGTCACCAGACCTCGGCCGAGTCCTGGGGAACTGGCCGTGCAGTCTCCCGTATCCCTCGTGTTCCCGGAGGTGGTACTCACCGTGCCGGCCAGGGAGCCTTCGGAAACATGTGCCGTGGCGGCCGCATGTTCGCACCTACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTGAACCAGAAGAGGTTCGCCGTCGTGTCCGCCATCTCCGCCTCCGCGGTTCCCTCCCTGGTCCTTGCCCGCGGTCACCGGATCGAGTCCGTACCTGAGCTCCCTCTCGTCGTCAGCGACACCGTTGAAGGCGTCGAGAAATCGAAGGAGGCCGTCAAGGTTTTGAAGCAGATCGGAGCATTTCCCGACGCGGAGAAAGCCAAGGACAGCCACGGGATCCGCCCTGGGAAAGGGAAGATGAGGAACCGCCGCTATATTTCCCGCAAGGGACCTCTGATCGTGTACGGAACCGAAGGCGCGAAGGCCGTTAAGGCTTTCAGGAACATTACCGGCGTGGAGGTCGCAAATGTGGAGAGGCTGAACCTTCTGAAGCTCGCTCCCGGTGGCCACATCGGGAGGTTCGTGATTTGGACCAAGTCAGCGTTCGAGAAACTCGATTCGATCTATGGAACCTTCGAGAAGGCATCGGAGAAGAAGAAGGGTTACGTTCTTCCAAGGTCAAAGATGGTGAATGCTGACCTGGCTAGGATTATTAACTCTGATGAGGTTCAGTCTGTTGTGAGGCCCATTAAGAAGGAGGTTAAGAGGGCCACTCTCAAGAAGAACCCTCTCAAGAACTTGAATGTGATGCTGAGGTTGAATCCTTATGCTAAGGCTGCTAAGAGAATGGCCCTTCTCGCTGAGGCACAGCGTGTTAAGGCTAAGAAGGAGAAGCTCGACAAGAAGCGAAGCACTGTTTCCTCCAAGGAGGATGCATCTGCTATCAGAGCTGCTGGAAAGGCTTGGTACCAAACCATGGTTTCTGACTCTGATTATGCCGAATTTGACAACTTCTCCAAGTGGTTGGGAGTTTCACAGTGA 1224 0.5662 MAAAAARPIVTVQALEGDMATGSAPTVPLPDVMKASIRPDIVTFVHDNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRFAVVSAISASAVPSLVLARGHRIESVPELPLVVSDTVEGVEKSKEAVKVLKQIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNITGVEVANVERLNLLKLAPGGHIGRFVIWTKSAFEKLDSIYGTFEKASEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKKEVKRATLKKNPLKNLNVMLRLNPYAKAAKRMALLAEAQRVKAKKEKLDKKRSTVSSKEDASAIRAAGKAWYQTMVSDSDYAEFDNFSKWLGVSQ* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0303 407 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Amo07g0303 407 Pfam Ribosomal protein L4/L1 family 27 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Amo07g0303 407 PANTHER BNAC03G35890D PROTEIN 3 407 - -
Amo07g0303 407 Coils Coil 343 363 - -
Amo07g0303 407 SUPERFAMILY Ribosomal protein L4 23 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Amo07g0303 407 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Amo07g0303 407 MobiDBLite consensus disorder prediction 56 74 - -
Amo07g0303 407 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Amo07g0303 407 MobiDBLite consensus disorder prediction 56 97 - -
Amo07g0303 407 PANTHER 60S RIBOSOMAL PROTEIN L4 3 407 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0303 Amo-Chr7 2821348 2823152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0303 1 407 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.590 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0303 K02930 - gmx:100779764 722.235