Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0258 ATGGCGGACTCGGACAACGAGTCAGGAGGCGCGCAGAACGCCGGGAACAATAACAGCGAGCTGTCGCCGCGGGAGCAGGACCGGTTCCTACCGATCGCGAACGTGAGCAGGATCATGAAGAAGGCGCTTCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGTGTTTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGGAAGACGATCAACGGCGACGATTTGCTTTGGGCGATGACGACGCTAGGGTTCGAGGAGTACGTGGAGCCGCTCAAGATTTATCTGCAGAGGTTCAGGGAAATGGAAGGTGAGAAGAGCGTTGCGGCGCGTGACAAGGACGCGGTTGCGGTCAACGCCGCATACGATTACGGAGGAGGTGGTAGTGGTGGCGCAATGGGGATGATGATGAACCAGGGACACGTGTACGGCTCTGGTGCGTTTCATCAAGTGGCTGTGAGTGGTGGAGGTAGTGGTGGTCCTGTTATGGGTAAGAGTGGTGGGCCCAATTATCCGGGTGCTGGATCTAATGCAGGTAGACCCAGATAG 588 0.5833 MADSDNESGGAQNAGNNNSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREMEGEKSVAARDKDAVAVNAAYDYGGGGSGGAMGMMMNQGHVYGSGAFHQVAVSGGGSGGPVMGKSGGPNYPGAGSNAGRPR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0258 195 MobiDBLite consensus disorder prediction 1 24 - -
Amo07g0258 195 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Amo07g0258 195 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Amo07g0258 195 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Amo07g0258 195 MobiDBLite consensus disorder prediction 171 195 - -
Amo07g0258 195 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 155 - -
Amo07g0258 195 MobiDBLite consensus disorder prediction 1 26 - -
Amo07g0258 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
Amo07g0258 195 ProSitePatterns NF-YB/HAP3 subunit signature. 60 76 IPR003956 GO:0005634|GO:0006355|GO:0043565
Amo07g0258 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Amo07g0258 195 Gene3D Histone, subunit A 17 135 IPR009072 GO:0046982
Amo07g0258 195 SUPERFAMILY Histone-fold 26 132 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0258 Amo-Chr7 2352521 2353803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0258 1 123 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.553 5.07e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo07g0258 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0258 K08065 - gmx:100813169 277.33