Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0252 ATGAGACAAATTGTTCCAAAGCATGCAAAGATTTGTGATGACACCAAAGAAATTGTTCGTAGCTGCGTTTGTGAGTTCATAGGAATAGTTACCTACGAAGCAAATGGGCATTGTGACACCGAGCAACGTAGGACTCTTGCTGCTGAGGACATCATATGGGCCATGTCGAGCCTTGGTTTCGACAACTACGCCGAGCTTCTCAAGGCTCATCTTAGCCATGTGCGCTATATTGGCGCTGAGGCACACTACACTGATGCTCCTCAACGCCTGACAAGAATGTTGCTCCACCACCAACCCCTACACGTGTGGGGGTTGGGTGGTGGGGCTTGGTCAACTAGTGGTGACAATGTTGGAGGGAGTGAGTTTGATCCTCTTGCTTACCTCAATCGTGACAAGTTCCTTTGA 405 0.4889 MRQIVPKHAKICDDTKEIVRSCVCEFIGIVTYEANGHCDTEQRRTLAAEDIIWAMSSLGFDNYAELLKAHLSHVRYIGAEAHYTDAPQRLTRMLLHHQPLHVWGLGGGAWSTSGDNVGGSEFDPLAYLNRDKFL* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0252 134 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Amo07g0252 134 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Amo07g0252 134 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Amo07g0252 134 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 84 IPR027113 GO:0001228|GO:0006355|GO:0016602
Amo07g0252 134 SUPERFAMILY Histone-fold 1 75 IPR009072 GO:0046982
Amo07g0252 134 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982
Amo07g0252 134 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 1 84 - -
Amo07g0252 134 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0252 Amo-Chr7 2292252 2292735 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0252 1 77 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.545 3.29e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo07g0252 CBFD_NFYB_HMF 4.9e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0252 K08065 - oeu:111407182 98.2117