Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0218 ATGAATTCTAGGTGCTTCCTTCCACAAGAGTCCTTATTCATCAACTCTGGCAGCATGGCTTCATTTTCTTCAAATTCTGCAGCTGCAGCAGCAGAAGATAGCAGGGTGAATAGTACCAGAAACCGGCCTCTTCCACGTGCCTCCCCGCCTTCGTTTTTGGTTCAGACGGCGATGAGGGTATCGAGAGCAAGATGGTTTACCTTCTTGAGAAGAGTGTTCCATTACCAAAATGGATCAAGGTCAAACCTTGGCTCTAATCCTTTCAATACTAGAACATGGATGATGATGGAGTTTATAGCTTTAGTGGTTCAGATAATCACTATAACATTCACTTTGGCTATTTCAAAAAAGGAGAGGCCTGTTTGGCCTATGAGGATTTGGTCAGCTGGTTATGATATTGGTTGTTTTCTTAATCTGCTTCTACTTTATGGCCGGTACCGGCAAATTTGTGCAACTCAAGGAGATGTTCTTAGCTTTTCTGATATTGAACAGCAGAGAAACAATGAAGAAACCAGTGTATACAGGATTTCCCATTTGATGAACAAGTGCAGGACTTCACTTGAGCTTTTCTTTGCAATTTGGTTTGTGATGGGAAATGTTTGGGTCTTCGACTCGCGTTTTGGATCCTTTATCCAAGCTCCAAAGCTCCATGTTCTTTGCATCACACTGCTTGCATGGAATGCAATATGCTACTCTTTCCCTTTCCTTCTGTTTCTGCTCCTGTGTTGCTGTGTGCCTCTAGCTAGCAGGCTCCTTGGCTACAACATGAACATGGGATCTTCGGACAAAGGAGCATCTGATGATCAAATCTCACAACTTCCAAGTTGGAGATACAAAGAATCACATACAAAGTTAGAGTTAGGCAACAAGGATTTCGAAGGCAGCGAGAAGTTGATCAACGAGGACTCAGAATGCTGTATTTGCTTAGCCAAGTATAAAGATAAAGAAGAAGTTAGACAATTGCCATGTTCCCATGTGTTCCACCTTAAATGTGTGGATCAATGGCTAAAAATCATATCATGTTGTCCCCTTTGCAAACAAGGACTAGAGAAGTAG 1056 0.4223 MNSRCFLPQESLFINSGSMASFSSNSAAAAAEDSRVNSTRNRPLPRASPPSFLVQTAMRVSRARWFTFLRRVFHYQNGSRSNLGSNPFNTRTWMMMEFIALVVQIITITFTLAISKKERPVWPMRIWSAGYDIGCFLNLLLLYGRYRQICATQGDVLSFSDIEQQRNNEETSVYRISHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFIQAPKLHVLCITLLAWNAICYSFPFLLFLLLCCCVPLASRLLGYNMNMGSSDKGASDDQISQLPSWRYKESHTKLELGNKDFEGSEKLINEDSECCICLAKYKDKEEVRQLPCSHVFHLKCVDQWLKIISCCPLCKQGLEK* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0218 351 ProSiteProfiles Zinc finger RING-type profile. 305 346 IPR001841 -
Amo07g0218 351 Pfam RING-like zinc finger 304 332 IPR001841 -
Amo07g0218 351 SUPERFAMILY RING/U-box 296 349 - -
Amo07g0218 351 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 25 350 - -
Amo07g0218 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 350 IPR013083 -
Amo07g0218 351 CDD RING-H2_RNF111_like 304 346 - -
Amo07g0218 351 SMART ring_2 305 345 IPR001841 -
Amo07g0218 351 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 25 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0218 Amo-Chr7 2003875 2006904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0218 52 349 C3H Transcription Factor Family AT4G26580 71.906 1.55e-148 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0218 - - adu:107496222 661.373