Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0209 ATGGGGTCTAACTCTGAGGTTCACTTCTCTGGATTTCACATGGATTGCCTAGAGCAAAGAAAGGCCGGCATGGAGCAACCAACAACTTCAGAAGATGATTTGTATAAACAACCTTTCGTTATAGGTGTTGCTGGTGGGGCAGCATCTGGCAAGACTGCCGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCATTTTACCATAATTTGACTGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACCGAGCAGTTGCTAAGTGTCATGGACAAGTTAAAGCGTGGTCAAGCAGTAAATATTCCAAAGTATGACTTTAAGGGTTACAAGAGTGGTGTGTCTCCGGCGAGAAGGGTAAACCCTGCAGATGTTATAATTTTGGAAGGGATCCTTATTTTCCATGATCCACGTGTTCGGGCATTGATGAATATGAAGATATTTGTTGATACAGTGCAGATGCTGATGTTCGGCTCGCAAGAAGAATTAGGCGTGATACTGCCGAGAAGGCTCGTGATATTGCAACAGTGCTTGATCAGTATTCTAAATTTGTGA 603 0.4196 MGSNSEVHFSGFHMDCLEQRKAGMEQPTTSEDDLYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELTRVQDYNFDHPEAFDTEQLLSVMDKLKRGQAVNIPKYDFKGYKSGVSPARRVNPADVIILEGILIFHDPRVRALMNMKIFVDTVQMLMFGSQEELGVILPRRLVILQQCLISILNL* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0209 200 CDD UMPK 40 167 IPR000764 -
Amo07g0209 200 PANTHER URIDINE KINASE 9 167 - -
Amo07g0209 200 Pfam Phosphoribulokinase / Uridine kinase family 40 172 IPR006083 GO:0005524|GO:0016301
Amo07g0209 200 PRINTS Uridine kinase signature 38 55 - -
Amo07g0209 200 PRINTS Uridine kinase signature 68 79 - -
Amo07g0209 200 PRINTS Uridine kinase signature 113 128 - -
Amo07g0209 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 167 IPR027417 -
Amo07g0209 200 Gene3D - 36 187 IPR027417 -
Amo07g0209 200 PANTHER URIDINE KINASE 9 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0209 Amo-Chr7 1943929 1946236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0209 4 167 PRT Gene Family AT1G55810 72.727 6.93e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0209 K00876 - gmx:100798205 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0305 11 4621874 4627907 Amo07g0209 07 1943929 1946236 PCT
Amo01g0354 01 5550726 5556892 Amo07g0209 07 1943929 1946236 PCT
Amo07g0209 07 1943929 1946236 Amo11g0305 11 4621874 4627907 PCT
Amo07g0209 07 1943929 1946236 Amo01g0354 01 5550726 5556892 PCT