LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo07g0170	ATGCTTCCTCCACGACAGCAATCCCGGGCTGGTGGACCACAAACATCCCTGTCTCTAGTTCCATTGGATACTCGTCTTTCTCCGGAGGAACCTAGATCAAACTCTGACAACCTCCGTGAATCTCCTACTGAAAGTGCCAGTTCTCGAGAAACTTGGCCTACAGCTGATGCAATCGCATCAAAGAAGATTGAGAATGGTAAAGCTGAGATTGATTGTCCTGAGCAGTCTGTTATTCGCCGTGTTTCTAGTGCAGACAAAATTAGTCTTCAGGACATTGCAAGAGAAAGAGTTGATGTAATATGTGAAAAAATGCATCATCTACCCGAAGAATTTCTAGAGGAGCTAAAAAACGGACTTAGAGTCATCCTTGAGGGAGGTAATGGCTCACAGCATCGGGAAGAATTTTTCATTTTGCAGAAGCTTGTTCAGAGCAGATCTGATTTAACAGCCAAGACATTGATTAGAGCACAGCGAGTGCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGATTCTTACATCCAAGCATCAGCCTATCACAGACTTCCCTGATTGAGATATTTGTGTACAAGAGATGTAGAAACATAGCTTGCCAAAGCCAGCTTCCAGCTGATGATTGTACCTGTGAAACATGCACTAACAGCAATGGTTTCTGCAATCTTTGCATGTGTGTAGTCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGTGACTTGTGTTCTCACTGGACTCACACGGATTGTGCGATTCGTGAGCAGCTTATTTGCATGGGCCCTTCTGTGAAGAGTGGAGCAGGAGCTAGTGAAATGGTTTTCAGGTGTCAAGCCTGTAACAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAACATTGTGCACCATCATGGGATGGGGAAGCCTTAATGCGAGAACTTGATTTTGTTAGTAGGATTTTCCATGGTAGTAAGGATCAGCGAGGAAGGAAACTGTTTTGGAAGTGTGATGATCTCAAGGAAAAACTTAAGACTGGAAAGGTGGATGCTAAGGCAGCATGCAGAGCAATTTTGATGGTTTTCCAAGAGCTTGAGATGGACTCTCCTAAGAGCCTGGAAAATTCAGAAGGTGGAAGGCTGATTGCTCCTCAAGAGGCATGCAATAGAATTGCTGAAGTGGTGCAAGAGGCTATAAGAAAGATGGAAATAGTCGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCTTGGCTCTTGAGGCTTGTGATCGTGAATTAGCCGATAAGGCCAGAGAAGCAGCAGAGCTCAAGATGGACAGGCAGAAAAAGAAGGTTCAGATTGAAGAGCTTGAGAGAATTGTGCGGCTTAAAACGGCAGAAGCTGATATGTTCCAACTGAAAGCTAATGAAGCTAAAAGGGAGGCTGAGAAGCTCCAGAGGATTGCTCTTGCCAAGTCAGACAAATCAGAGGAGGAATATACTAGCAATTATTTAAAACAAAAATTAAGTGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAAAGTTCTCGAGTATCACAGAGCAGTAGCGGCGGTGATCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTTCTGTACAGTGTTCCTCCCAAGGCAGACAGTCAATCTAATGAGTGCCACCCTTTCCGAACAAATCCATGA	1704	0.4407	MLPPRQQSRAGGPQTSLSLVPLDTRLSPEEPRSNSDNLRESPTESASSRETWPTADAIASKKIENGKAEIDCPEQSVIRRVSSADKISLQDIARERVDVICEKMHHLPEEFLEELKNGLRVILEGGNGSQHREEFFILQKLVQSRSDLTAKTLIRAQRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFVYKRCRNIACQSQLPADDCTCETCTNSNGFCNLCMCVVCSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGAGASEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDQRGRKLFWKCDDLKEKLKTGKVDAKAACRAILMVFQELEMDSPKSLENSEGGRLIAPQEACNRIAEVVQEAIRKMEIVADEKMRMFKKARLALEACDRELADKAREAAELKMDRQKKKVQIEELERIVRLKTAEADMFQLKANEAKREAEKLQRIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKLQESSRVSQSSSGGDPSSMLMYSKIHDLLYSVPPKADSQSNECHPFRTNP*	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo07g0170	567	PIRSF	UCP025218	1	553	IPR004082	-
	Amo07g0170	567	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	1	558	IPR004082	-
	Amo07g0170	567	MobiDBLite	consensus disorder prediction	38	54	-	-
	Amo07g0170	567	Pfam	Coiled-coil region of Oberon	413	546	IPR032535	-
	Amo07g0170	567	SMART	PHD_3	225	285	IPR001965	-
	Amo07g0170	567	PANTHER	PROTEIN OBERON 2	1	558	-	-
	Amo07g0170	567	Pfam	PHD - plant homeodomain finger protein	195	318	IPR032881	-
	Amo07g0170	567	MobiDBLite	consensus disorder prediction	1	54	-	-
	Amo07g0170	567	MobiDBLite	consensus disorder prediction	1	22	-	-
	Amo07g0170	567	Coils	Coil	419	488	-	-
	Amo07g0170	567	CDD	PHD_OBE1_like	225	284	-	-
	Amo07g0170	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	232	252	IPR004082	-
	Amo07g0170	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	103	125	IPR004082	-
	Amo07g0170	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	160	175	IPR004082	-
	Amo07g0170	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	448	468	IPR004082	-
	Amo07g0170	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	145	160	IPR004082	-
	Amo07g0170	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	186	207	IPR004082	-
	Amo07g0170	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	305	324	IPR004082	-
	Amo07g0170	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	487	509	IPR004082	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo07g0170	Amo-Chr7	1670983	1674828	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo07g0170	195	297	PHD Gene Family	AT5G57380	30.769	3.11e-09	57.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo07g0170	-		-	gmx:100803870	1051.2