Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0163 ATGCAGGCATCAGAGCATCATAGAAGTTCAAGTATGTACTATCAACCAATGCAGCAGGTTGAGGCATACTGCATGCCYCAATATCAAGCTCTGAATCATCATCAGTATTACAATGATGGAGGCCATGGTATTGGAAGCAGATTCTCTAATCAAAGTTCTTCTGAAATTTACTGCACATTGGAGTCATCATCTGCAACCGGCAGTTTTAATGTTTACAATTCTCCTTCAACTGTTAGTTTCTCACCAAATGGTAGCCCGGTTTCTCTTCAAGATTCTCAATCTCAGTCATATCCACCTGACAATAACTATGGATCTCCTATGAGTGGTTCGTGCATAACTGACGATTTAAGTACCTTCAAGCACAAGCTGAGAGAGTTGGAGAGTGTGATGTTTGGTCCTGATTGTGATAATCTTGATAGTTATGACAGTTCATTCAAGGATGCAACTGATTTCATGTCATCCGAGATGGACAGCTGGAGACAAACAATGGTGGCAATTTCTTGCAAGAACTTAAAGCATGTACTCGTCGTGTGTGCCAAAGCGATTGCAGAGAATGATCTGCTAATGGCACAATGGTTGATGGATGAACTGAGGCAGATGGTGTCTGTATCTGGCGAACCGATTCAAAGGTTGGGAGCATACATGTTGGAAGGCCTAGTTGCACGGTTGTCTTCTTCCGGGAGTTCAATCTACAGAGCCTTGAGATGCAAGGAACCAGAAAGTGCTGAGCTCCTCTCCTATATGCACATACTCTATGAGGTTTGCCCCTACTTCAAATTCGGATACATGTCTGCGAATGGAGCAATCGCAGAAGCTATGAAGGATGAAGACAGAGTTCACATAATTGATTTTCAAATTTCTCAAGGGAGCCAGTGGATCACTTTGATTCAAGCTTTTGCAGCTAGGCCTGGAGGACCACCACACATCCGAATTACAGGTATTGATGATTCAACATCGGCTTATGCGCGCGGTGGTGGGCTGCACATTGTGGGAAAGAGGTTGTCCAAGCTTGCAGAGCATTTTAAAGTGCCATTTGAATTTCATGCTGCAGCTATATCTGGTTGTGATGTTCAGCTGCATAATCTTGGTGTTCGACCGGGCGAGGCATTAGCTGTGAATTTTGCATTCATGCTACATCACATGCCAGATGAAAGTGTGAGCACCCTGAATCATAGGGATAGGCTCTTGAGGCTGGTCAAGAGCCTATCCCCGAAAGTGGTGACATTGGTGGAGCAAGAATCCAACACCAACACAGCTGCATTCTTTCCACGTTTCCTCGAAACTATGGACTACTACACAGCCATGTTCGAGTCGATAGACGTGACTCTTCCGAGGGAACATAAAGAGAGGATCAATGTGGAGCAGCATTGCTTGGCAAGGGATTTGGTTAACATCATAGCATGTGAAGGGGTTGAGAGAGTGGAAAGACATGAAGTGCTTGGGAAATGGAGGTCAAGGTTTGCAATGGCTGGTTTCAGTCCTTACCCTTTGAGTTCATTGGTGAATGGTACCATCAAGAAACTGCTTGATAACTACAGTGATAGATATAGGCTTGAAGAGAGAGATGGAGCATTGTATCTTGGTTGGATGAATAGAGATTTGGTTGCCTCTTGTGCATGGAAATGA 1626 0.4428 MQASEHHRSSSMYYQPMQQVEAYCMPQYQALNHHQYYNDGGHGIGSRFSNQSSSEIYCTLESSSATGSFNVYNSPSTVSFSPNGSPVSLQDSQSQSYPPDNNYGSPMSGSCITDDLSTFKHKLRELESVMFGPDCDNLDSYDSSFKDATDFMSSEMDSWRQTMVAISCKNLKHVLVVCAKAIAENDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSSSGSSIYRALRCKEPESAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVGKRLSKLAEHFKVPFEFHAAAISGCDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTLNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFSPYPLSSLVNGTIKKLLDNYSDRYRLEERDGALYLGWMNRDLVASCAWK* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0163 541 ProSiteProfiles GRAS family profile. 162 541 IPR005202 -
Amo07g0163 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 541 IPR005202 -
Amo07g0163 541 MobiDBLite consensus disorder prediction 82 104 - -
Amo07g0163 541 Pfam GRAS domain family 171 541 IPR005202 -
Amo07g0163 541 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 15 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0163 Amo-Chr7 1541049 1544081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0163 12 541 GRAS Transcription Factor Family AT5G48150 66.791 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo07g0163 GRAS 2.6e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0163 - - gmx:100808300 963.755