Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0162 ATGGAAGCAGTGACAGTTGTTCCCATGGTTTCCTCAGAAGAAACTGCAGATCACAATGTTCCTTATGCTATACCACTGCAGAGAGCAAGTCCTCATAGTGATATTACAGAATCACAAGGGATTCATGGAGCTGAAACCCCTTCGTCCAAGCAAAAGGAAGAAACAAGTATTCCTTCTGCTGTGGCTCAAAACAAAGTGAAGGATTCTGATGTTACTGCTTCTGCATTGCAATCAGATCGGCAACGAAGCACACACATTGCAGCATCAGTTGAAAAACTTGTGCAAAGCCCTGATACACCTTTCCGTGAAAAACGTCATCCATCACAATCTGGTCATGACAGTCCCTCAATAATACGTGAAAGGGTATCAAAAGATGGGTATAACTGGCGAAAATATGGCCAGAAAAATGTTAAAGGGAATGAATTTATAAGGAGCTATTACAAGTGTACGCATCCGAACTGCCAGGCAAAGAAACAGTTAGAGCAGTCAAACGATGGCCAGATTACAGATTCCATTTGCATTGGTCAGCATAATCATCCTAGGCCTCAATCCAGCATCACAAAGCCTGTTGGTCCTGTTCTTCCTGTTCTTGAAGAAGGACCAGACAAGCCCCGTGTCGCCAATGTAGAAGTTGAAGACAAATCATTGAATGAGCATGCAAGTGTACCTCAACAGATGAAGTTTTCACACTCCCTTCAGATTACAAATGTTCCTGCAGCTGATCTGATGAAAGCTGAACATTCACAACTGACCACAGCAAATGACGAGGTTCACAACAATGACTATCCTGACTCAAAACGGCAGAAGATAGACGATAGTAATATTGAAGTCAGTGTAGCTGACAAGTCAACTTGTGCGTCTCGTGTTGTCGTTCAAACTTCAAGTGAGGTTGATTTTGTAAATGATGGGTACCGTTGGCGCAAATATGGTCAGAAACTAGTTAAAGGAAATGCAAATCCCAGAAGTTATTATCGATGCTCTAGTCCCGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAGTTGTAATAACTACKTATGAGGGACAACATGATCATGAAATCCCGCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATGCTCAAACAACAACCATTAATGGCAAGCCAGGAACCAATTCTGTATCAAATCCTGTTTCTACAGATACAAGAGGAAGCAGATCAAATGAGAAAGTAAATGGCAACTCAATTACTAAATCAGAGGCTGGTAAGAGTCCTGAAAGTAAATTAAATGGGCAACAACAACAAAAAAATGAAAATGCAGTTGCCAAACAGGATTATGTTGGTGCTAACATCACATGCCAATCAAATTCTGAAGATCCATGTCGATCAAAATCAAACGAACAGCCGAAAGATGACGTAGAAACTAAATCAGAAGGAAAGAACGGATCCCCTAATGTGGTTGTTGTTCATGATACTCCTGGTCAAGAAGGTCAACTCAAGAAGCAATCAGCATCTGATGCAGAAGCTGTCCAGAGCTAA 1518 0.417 MEAVTVVPMVSSEETADHNVPYAIPLQRASPHSDITESQGIHGAETPSSKQKEETSIPSAVAQNKVKDSDVTASALQSDRQRSTHIAASVEKLVQSPDTPFREKRHPSQSGHDSPSIIRERVSKDGYNWRKYGQKNVKGNEFIRSYYKCTHPNCQAKKQLEQSNDGQITDSICIGQHNHPRPQSSITKPVGPVLPVLEEGPDKPRVANVEVEDKSLNEHASVPQQMKFSHSLQITNVPAADLMKAEHSQLTTANDEVHNNDYPDSKRQKIDDSNIEVSVADKSTCASRVVVQTSSEVDFVNDGYRWRKYGQKLVKGNANPRSYYRCSSPGCPVKKHVERASHDSKVVITTYEGQHDHEIPPGRTVTHNAATNAQTTTINGKPGTNSVSNPVSTDTRGSRSNEKVNGNSITKSEAGKSPESKLNGQQQQKNENAVAKQDYVGANITCQSNSEDPCRSKSNEQPKDDVETKSEGKNGSPNVVVVHDTPGQEGQLKKQSASDAEAVQS* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0162 505 MobiDBLite consensus disorder prediction 375 505 - -
Amo07g0162 505 MobiDBLite consensus disorder prediction 456 471 - -
Amo07g0162 505 SMART WRKY_cls 300 359 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g0162 505 SMART WRKY_cls 123 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g0162 505 PANTHER WRKY TRANSCRIPTION FACTOR 1 10 470 - -
Amo07g0162 505 MobiDBLite consensus disorder prediction 375 434 - -
Amo07g0162 505 MobiDBLite consensus disorder prediction 1 119 - -
Amo07g0162 505 MobiDBLite consensus disorder prediction 489 505 - -
Amo07g0162 505 Gene3D WRKY domain 115 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo07g0162 505 Pfam WRKY DNA -binding domain 124 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g0162 505 Pfam WRKY DNA -binding domain 301 358 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g0162 505 ProSiteProfiles WRKY domain profile. 118 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g0162 505 Gene3D WRKY domain 287 353 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo07g0162 505 MobiDBLite consensus disorder prediction 441 455 - -
Amo07g0162 505 ProSiteProfiles WRKY domain profile. 295 360 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g0162 505 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 470 IPR044810 GO:0003700
Amo07g0162 505 SUPERFAMILY WRKY DNA-binding domain 119 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo07g0162 505 MobiDBLite consensus disorder prediction 31 90 - -
Amo07g0162 505 SUPERFAMILY WRKY DNA-binding domain 292 360 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0162 Amo-Chr7 1536804 1540561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0162 109 374 WRKY Transcription Factor Family AT2G04880 50.735 1.78e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo07g0162 WRKY 3.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0162 K18834 - gmx:100781219 529.25