Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo07g0151 | ATGATTTCAGCTATTTCGTGGATACCGATAGGTGCTTCGAAGGCGGAACCCACCGTAGTTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACCGCCGCCGCCGCCGCCGCCAGTGGAGAAGACAGTGAAAATGAGGAAGAAGCAAGTGATGAACGCATGGATGATGCCGATGGCGCCGTCGATGAAGTTGCGCGAGCACTCAATGTTGCTGATGCTCTCGGGAAGGCTGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATTAAAGATAAGAACGATGATGATGACTCCGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCTGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGATGTCGGTACTCGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAGAAAAAGAAGGGGAAGAAGAAATCAATCAAATATAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAGCGTTCAGGAATATACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGGAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCGTGAACCAYAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGGTCCTGAGGGATGGAAGGATGCCATCTCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTGAGCACTATTTTGTGGTGAGTCTCGAGYATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAAAGTCTGAATCCACATCTGATCTAAGTTCTACATTTARTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAACGTCTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAACAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTCTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA | 1458 | 0.4431 | MISAISWIPIGASKAEPTVVEPPSKEEIQDIITAAAAAASGEDSENEEEASDERMDDADGAVDEVARALNVADALGKADKLDDIALGLKELDMEHYDDEDEGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTREMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKGKKKSIKYKDDSHTDSVLGLAWNKAFRNILASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHREPXILLSGSFDHTVVLRDGRMPSHPGYKWSVTADVESLAWDPHTEHYFVVSLEXGTVKCFDVRTAKSESTSDLSSTFXLHAHDKAVTSVSYNVSAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS* | 486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo07g0151 | 485 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 269 | 283 | IPR019775 | - | |
| Amo07g0151 | 485 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 386 | 424 | - | - | |
| Amo07g0151 | 485 | MobiDBLite | consensus disorder prediction | 42 | 59 | - | - | |
| Amo07g0151 | 485 | Pfam | WD domain, G-beta repeat | 385 | 419 | IPR001680 | GO:0005515 | |
| Amo07g0151 | 485 | PANTHER | PERIODIC TRYPTOPHAN PROTEIN 1 | 1 | 477 | IPR044285 | GO:0006364 | |
| Amo07g0151 | 485 | Gene3D | - | 331 | 481 | IPR015943 | GO:0005515 | |
| Amo07g0151 | 485 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 249 | 287 | - | - | |
| Amo07g0151 | 485 | Gene3D | - | 89 | 330 | IPR015943 | GO:0005515 | |
| Amo07g0151 | 485 | PANTHER | TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN | 1 | 477 | - | - | |
| Amo07g0151 | 485 | PRINTS | G protein beta WD-40 repeat signature | 406 | 420 | IPR020472 | - | |
| Amo07g0151 | 485 | PRINTS | G protein beta WD-40 repeat signature | 451 | 465 | IPR020472 | - | |
| Amo07g0151 | 485 | PRINTS | G protein beta WD-40 repeat signature | 269 | 283 | IPR020472 | - | |
| Amo07g0151 | 485 | SUPERFAMILY | WD40 repeat-like | 201 | 470 | IPR036322 | GO:0005515 | |
| Amo07g0151 | 485 | MobiDBLite | consensus disorder prediction | 13 | 61 | - | - | |
| Amo07g0151 | 485 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 431 | 473 | IPR001680 | GO:0005515 | |
| Amo07g0151 | 485 | SMART | WD40_4 | 379 | 419 | IPR001680 | GO:0005515 | |
| Amo07g0151 | 485 | SMART | WD40_4 | 285 | 325 | IPR001680 | GO:0005515 | |
| Amo07g0151 | 485 | SMART | WD40_4 | 329 | 368 | IPR001680 | GO:0005515 | |
| Amo07g0151 | 485 | SMART | WD40_4 | 179 | 218 | IPR001680 | GO:0005515 | |
| Amo07g0151 | 485 | SMART | WD40_4 | 424 | 464 | IPR001680 | GO:0005515 | |
| Amo07g0151 | 485 | SMART | WD40_4 | 240 | 282 | IPR001680 | GO:0005515 | |
| Amo07g0151 | 485 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 386 | 428 | IPR001680 | GO:0005515 | |
| Amo07g0151 | 485 | Pfam | Anaphase-promoting complex subunit 4 WD40 domain | 248 | 306 | IPR024977 | - | |
| Amo07g0151 | 485 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 406 | 420 | IPR019775 | - | |
| Amo07g0151 | 485 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 249 | 291 | IPR001680 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo07g0151 | Amo-Chr7 | 1489460 | 1494564 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo07g0151 | 266 | 464 | U-box Gene Family | AT2G33340 | 30.288 | 2.22e-09 | 57.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo07g0151 | K14791 | - | gmx:100807947 | 685.641 |