Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0127 ATGGAGAACGAGATGCAACAGCTGCTTAGCATGGGCTTCCCCAACGAGCTAGCCGCCCAAGCCTTGGCTGCCACCGGTGGCAGATCCACCGTCAAAGCCACCGAATGGATCCTAACTCACAAATCGAACCCTTCAGCTTCCCCACCGCCGGCGCCCACGCAACCTAAGATCGAACGGTTTTTCCACTCGCACTCGAAGCAAGAAGGGCAAGCAATTGATGTTGAGCAACAGCAACACGACGAGGCATCCCCACTCTCAAAACGCCAAAGAACACTACCCTCCTCAAATCCCAATCCTAATCCTAATCCTAATCCTCAATCTTCCTTCTTCTTCAACCCTCTTCGCCCTTCCAAGAAGAACGCCCACGAGCCCCTATACGAGCGCCTCCGCCCCAGAACCCTCGACGACGTCCTTGGTCAGGACCATCTCCTCTCCCCCACTTCCCTCCTTCGCTCCGCCATCCACCGCAACCGTCTCCCTTCCATCCTCCTCTGGGGTCCCCCCGGCACCGGCAAGACCACCATCGCCAGAGCAATCGTCAACTCCTTTCCCCATCACCAATGCCCTTGTTATCGCTTTGTCTCCTTATCCGCTGTCACCAGCGGCGTCAAAGATGTCCGGGACGCCGTGGACGAGGCCAGAAAGCTGAGAGTGAAGAGCAACCAGAGAACCGTTCTGTTCGTGGATGAGGTTCACAGATTTAACAAATCCCAGCAGGACTCTTTCTTGCCCGTCATTGAAGATGGCAGCATTGTCTTCGTGGGAGCCACCACCGAGAACCCTTCGTTCCACTTGATCACCCCTCTCTTGTCTCGCTGCAGGGTCCTTACCCTTAACCCTCTCAAGCCCCACCATGTTGCCTTGCTTCTCAGAAAGGCTGTCAATGACTCCGACAAAGGGTTGACTCACAGCGCTGGTTGTCAGGTTGATGTGAGCCAGGATGTTCTGGATTTCATAGGAAACAACTGTGATGGGGATGCTCGTGTCGCCCTGAATGCTCTCGAGATAGCTGCTGTTACTGCTGCTGCAAGGCTCCAACAACCTGCTAACCAATCCAAAGAGGAGCAACAGAAGGCTGCTGCTGCTGTTGCTGTTGCTGTTACACTCGATGACGCAAAGGAGGCACTTCAGTGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTGATCAGCGCACTCCACAAATCCATGAGGGGGAGTGATGCCAATGCAGGGATTTATTGGTTGGCAAGAATGTTGGAAGGAGGGGAAGAGCCTCTCTACATTGCACGCAGGCTCATAAGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCCTCAGCTCTCAATCAGGCTGTTTCTTGCTATCAGGCCTGCCACTTCCTGGGAATGCCAGAATGCAATGTCATTCTTGCGCAGTGTGTCGCCTACTTGGCATTGGCTCCTAAATCTGTCTCTGTTTACAGAGCAATAGGTGCTGCTCAGAAGGTGGTGAGGGAATCTATTGGGCAGAATGAAGGGGTGCCCCTTCATCTCAGGAATGCTCCGACCAAACTAATGAAGGACATTGGATATGGCAAGGGATACATATACCCTCCAGACAACCCTTCAGCAACACAGAGCTATTTGCCGCCCTCACTCGCAGGCTACAAGTTCCTTGATTGGCCTACCAGGACTGCTTCTCATGATGAAGCAAATCCATCCACATCTGGGTCTGGCAGTATATAG 1719 0.53 MENEMQQLLSMGFPNELAAQALAATGGRSTVKATEWILTHKSNPSASPPPAPTQPKIERFFHSHSKQEGQAIDVEQQQHDEASPLSKRQRTLPSSNPNPNPNPNPQSSFFFNPLRPSKKNAHEPLYERLRPRTLDDVLGQDHLLSPTSLLRSAIHRNRLPSILLWGPPGTGKTTIARAIVNSFPHHQCPCYRFVSLSAVTSGVKDVRDAVDEARKLRVKSNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPHHVALLLRKAVNDSDKGLTHSAGCQVDVSQDVLDFIGNNCDGDARVALNALEIAAVTAAARLQQPANQSKEEQQKAAAAVAVAVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAGIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVSVYRAIGAAQKVVRESIGQNEGVPLHLRNAPTKLMKDIGYGKGYIYPPDNPSATQSYLPPSLAGYKFLDWPTRTASHDEANPSTSGSGSI* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0127 572 Pfam MgsA AAA+ ATPase C terminal 403 551 IPR021886 -
Amo07g0127 572 Gene3D - 481 562 - -
Amo07g0127 572 Gene3D - 115 279 IPR027417 -
Amo07g0127 572 Gene3D - 1 53 - -
Amo07g0127 572 Gene3D - 377 480 - -
Amo07g0127 572 CDD AAA 139 274 - -
Amo07g0127 572 Pfam UBA/TS-N domain 5 37 IPR015940 -
Amo07g0127 572 Pfam ATPase family associated with various cellular activities (AAA) 162 275 IPR003959 GO:0005524|GO:0016887
Amo07g0127 572 MobiDBLite consensus disorder prediction 76 115 - -
Amo07g0127 572 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 40 IPR015940 -
Amo07g0127 572 CDD HLD_clamp_RarA 281 377 - -
Amo07g0127 572 SUPERFAMILY post-AAA+ oligomerization domain-like 387 554 IPR008921 GO:0003677|GO:0006260
Amo07g0127 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 349 IPR027417 -
Amo07g0127 572 Pfam AAA C-terminal domain 308 402 IPR032423 -
Amo07g0127 572 SUPERFAMILY UBA-like 3 51 IPR009060 GO:0005515
Amo07g0127 572 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 17 559 - -
Amo07g0127 572 Gene3D - 281 355 - -
Amo07g0127 572 SMART AAA_5 158 281 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0127 Amo-Chr7 1238100 1240319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0127 124 355 Core DNA Replication Machinery Family AT1G77470 26.471 2.01e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0127 K07478 - gmx:100799257 804.283