Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0090 ATGCGAGCACTACTTGTGACCATGATCTATAATAAATCATTGACACTTTCATGTCAATCAAAGCAAGGCCATACTTCCGGGGAAGTAATCAACTTCATGTCAGTTGATGCTGATAGAATTGGTGTCTTCAGTTGGTACATTCATGATTTGTGGATGGTAGCTCTGCAAATTTCTTTAGCCTTGTTGATTTTGTATAAAAGCCTTGGCCTTGCTTCAATTGCTGCATTTGTTGCAACCATTGTTGTAATGTTGGCAAATGTCCCCTTGGGATCATTGCAAGAAAAATATCAGGATAAGTTGATGGATTCAAAAGATATAAGAATGAAGGCAACATCAGAGATTCTCAGGAACATGAGGATTCTCAAACTTCAAGGGTGGGAAATGAAGTTTCTGGCTAAGATAACTGAACTCAGGAAAACCGAGAAGGGCTGGTTAAAGAAATTTGTTTATACATCAGCCATGACCACATTTGTGTTCTGGGGTGCTCCAACATTTGTATCTGTGGCTACTTTTGGAACTTGTATGCTTATGGGGATTCCACTTGAATCAGGGAAGATCTTGTCTGCACTTGCTACCTTCCGGATTCTTCAAGAGCCTATATATAATCTTCAAGATACAATTTCAATGATAGCACAAACTAAGGTTTCCGTTGATAGGATCTCATCATTCCTTCGACTTGACGACTTGCAGTCCGACGTTGTAGAGAGGCTTCCTCGCGGTTCTTCTGATAAAGCAATTGAAGTGGTAGATGGAAATTTCTCTTGGGATTTATCTGCACCGAATGCAACATTGAAGAACATAAATCTCACAGTTCTACATGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGATCAGGCAAGTCTACGTTACTTTCCTGTATATTAGGAGAAGTGCCAAAGAAATCAGGTATCTTGAAGGTGTGTGGAACAAAGGCCTATGTTGCTCAGTCTCCATGGATACAAAGCGGAAAGATAGAGGATAATATATTGTTTGGACAGGAGATGGATAGGGAAAGGTATGAGAAGGTACTTGAATCTTGTTGCTTGAAGAAGGATGTAGAAGTTTTGTCCTTTGGTGATCAGACAGTTATAGGAGAACGCGGTATCAATTTGAGTGGAGGACAGAAACAAAGAATACAAATTGCTCGTGCCCTTTACCAAGATGCTGATATATATTTGTTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTCTTTAAGGAAGCTTGCTTGGCCAACTAA 1254 0.4027 MRALLVTMIYNKSLTLSCQSKQGHTSGEVINFMSVDADRIGVFSWYIHDLWMVALQISLALLILYKSLGLASIAAFVATIVVMLANVPLGSLQEKYQDKLMDSKDIRMKATSEILRNMRILKLQGWEMKFLAKITELRKTEKGWLKKFVYTSAMTTFVFWGAPTFVSVATFGTCMLMGIPLESGKILSALATFRILQEPIYNLQDTISMIAQTKVSVDRISSFLRLDDLQSDVVERLPRGSSDKAIEVVDGNFSWDLSAPNATLKNINLTVLHGMRVAVCGTVGSGKSTLLSCILGEVPKKSGILKVCGTKAYVAQSPWIQSGKIEDNILFGQEMDRERYEKVLESCCLKKDVEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEACLAN* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0090 417 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 212 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo07g0090 417 CDD ABC_6TM_ABCC_D1 1 220 IPR044746 GO:0140359
Amo07g0090 417 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 415 - -
Amo07g0090 417 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1 415 - -
Amo07g0090 417 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 246 415 IPR003439 GO:0005524
Amo07g0090 417 Gene3D - 225 416 IPR027417 -
Amo07g0090 417 CDD ABCC_MRP_domain1 246 415 - -
Amo07g0090 417 Pfam ABC transporter transmembrane region 5 199 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo07g0090 417 SUPERFAMILY ABC transporter transmembrane region 3 225 IPR036640 GO:0005524|GO:0016021
Amo07g0090 417 ProSitePatterns ABC transporters family signature. 371 385 IPR017871 GO:0005524
Amo07g0090 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 411 IPR027417 -
Amo07g0090 417 Gene3D ABC transporter type 1, transmembrane domain 1 224 IPR036640 GO:0005524|GO:0016021
Amo07g0090 417 Pfam ABC transporter 264 398 IPR003439 GO:0005524
Amo07g0090 417 SMART AAA_5 273 415 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0090 Amo-Chr7 1040309 1041666 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0090 246 413 Calmodulin-binding Proteins AT2G36910 32.967 1.07e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0090 - K05666 gmx:100794567 739.184