Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0088 ATGATGTCTTATGTTTCCTCGTACCTTTCCCTCATGCACTCTCACATAAGCTTTCTTCTCCAACCCATTTTTCTTCATGCATTCTCAGCCATCATCCACCTCCTACTGTTGGCTATAGTTTTGGTTTCATGGCTTTGGAAGAAGATCATCACTGTTGGAGAAACTGGAGATGACTCCAATAACAAGCATCAGAAGCCTTTGAATAATGCTGTGTTAAGAAAGACTACTTTGTTTTGTTCSTTAGGTRCTTCTGCTTTCAAYCTTATCCTCTGCCTCTATAGTTACTACTTCTTAGGAGAAAAAGAAAAAGAAGAAGAAAAGCTCGTGACCCATTTGGATTTAGGTCTAAAAACTCTTGCTTGGGGTGTTATTAGTGTTTGCTTGCACAAAAGCTTGCTCTTATTTAGTTCAGGTGATGGTAGAAGAAGGTTCTCTTTCATGTTCAGAGCATGGTGTGTTTTCTACTTTTTTGTTTCATGTTACTCCTTTGTAGTGGACTTTGTTCTTCATTTTTATGAAAAGCACGTGACTTTACCAGCTCAGGACATAGTTTCTGATGTGATTTCAGCTTCTGTGGGTTTATTCTTTTGCTATGTGGTGTGTTTTGTGAAGAAAATTGATGAGTKTGAAGAGGRTCATATCATTGATGATCTTCAAGATCCTTTACTATTGGATAATGGTAATGCAACTGTTTGTAGTAATGCCTCTGGGGCTGACATTGTTACCCCTTTCTCAAATGCTGGGATTTTCAGCATTCTAACATTCTCTTGGGTGGGCCCTCTTGTTTCTCTTGGCAATAAGAAAACCTTGGACCTTGAGGATGTTCCACTACTTGATAAAAGAGATAGTGTAGTTGAAATTTTTYCAACTTTCAGAGAAAAAGTTGAAGAAGATTGTGGTGCAATTAATYACATAACCACTCTTAARCTGGTGAAGTTGTTAGTACTATCAGCATGGAAAGAGATTCTCTTCACTGCATTTCTTGCATTGTTGAATGCYTTGGCTTCTTATGTTGGTCCTTATCTTATTGATGCTTTTGTTCAATACCTTGATGGTCAAAGGGTTTATGAGAATCAAGGCTATGTTCTTGTTTCTGCATTTTTCTTATCAAACCTTGTTCAGTCCCTATCACAAAGGCATTGGTTCTTTAGGTTGCAGCAAGTTGGGATTAGAATCCAAGCACTTCTTGTGACTATGATCTATAACAAAGCCTTGACCCTTTCATGTCAATCAAAGCAGGGTCATACTTCTGGTGAAATGATCAATTTCATGACTGTTGATGCTGAAAGAGTTGGAACTTTCACTTGGTATATGCATGATTTGTGGAGGGTAGCTTTGCAAATTGTCTTAGCCTTGTTGATTTTGTATAGAAGTGTTGGTCTTGCTTCAATTGCCGCATTTGTGGCCACTGTCATTGTCATGTTGGTAAATGTTCCTGTGGGAAAAATGCAACAGAAGTTTCAGAAAAACTTGATGGATTCAAAGGACGCAAGAATGAAGGCAACATCTGAGATTCTAAGGAACATGAAGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAGATAAATGAGCTTAGGAAARCTGAGGAAGGGTGGTTAAAGAAATCTGTATACAATTCAGCTATCAGTGCTTTTGTGTTCTGGATTGCTCCGTCTTTTGTATCTGTTGTTACTTTTGGTACATGTATGGTTATGGGGATTCCACTTGAATCAGGGAAGATCTTATCAGCACTTGCTACATTTAGAATTCTTCAAGGTGCCATATATAATCTTCCAGAAACAATATCAGCTATAGTACAAACTAAGGTTTCTCTTGATAGGATTTCTTCTTTCCTTCGTCTCGGTGACTTGCAATCTGATGTTGTAGAGAAGCTTCCTTTAGGTACTTCTGATAAAGCAATCGAAGTAACTAATGGAAACTTCTCTTGGGATCCATCTTCTCCAAATACAACATTGAAGAACATAAATTTTGAAGTTTTCCATGGCATGAGGGTTGCTGTTTGTGGGACAGTTGGATCAGGAAAATCTACATTGCTATCTTGTATGTTGGGAGAGGTACCGAAGGTTTCGGGGACTCTAAAAGTGTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGTGGAAAGATAGAGGATAATATACTGTTTGGTAAAGAGATGGATAAGGAAAAGTATGAAAAGGTTCTTGAAGCTTGTTCCTTGAAGAAGGATCTTGAGATTTTATCATTTGGGGACCAAACAATTATAGGTGAACGTGGGATAAATATGAGTGGTGGACAAAAACAAAGGATTCAAATAGCACGTGCTTTATATCAAGATTCTGATATATATCTGTTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCATCTCTTTAAGGAATGTTTGCTAGGCCTTTTAAGATCAAAGACAGTGATTTATGTTACTCATCAAGTTGAGTTCTTACCGGCTGCTGATCTTATATTGGTAATGAAAGATGGGAAGATTACTCAATGTGGAAAGTATGCTGATCTGCTTAACAATGGAACTGATTTTATGGAACTTGTTGGTGCACATAAAAAAGCTTTGTCTACACTTGATTCAATAGATGAAAGAATAATATCCAATGAAATATGTACCTTGGAACAAGATTCAGATTTTCCTATTTCTCAGGGTGGAGAAGAAGAAGAGGAAAAGAAAGATGAGCAAAATGGTAAAACTGGTAAGAAAGGTGATGAGGCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGAGAGAGTGGTAGAGTTGGATTTTCAGTGTATTGGCAATATATCACTATGGCATATGGAGGTGCTCTTGTTCCTTTCATTCTGTTGGCTCATACTCTCTTCCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACACCAATCTCACAAGATGTYGAGCCACCTGTTTCTGRAACAACTCTTATAGCAGTCTATATTGCTTTGGCTGTTGWAAGTTCTTTCTGCATTCTTGCAAGGACTATACTATTTGCCACTGCTCTATGTAAGACAGCTACCATAATCTTCAATAAGATGCACTTCTGCATTTTTCGCGCTCCAATGGCATTCTTTGATTCCACTCCAAGCGGCCGAATTCTTAATAGAGCTTCTACTGATCAAAGTTCAGTAGACACTGAGGTTCCTTATCAGTTTGCTTCATTTGTTTTTCCACTGATCCAACTTGTGGGAATTATAGCAGTGATGTCTCAAGCTGCATGGCAAGTTTTTATTGTCTTTATACCTGTGATTGCAATCAGCATTTGGTATCAGCAATATTATTTGCCAGCAGCTCGAGAACTATCGCGTTTAGTTGGAGTATGCAAAGCCCCAATCATTCAGAACTTTTCTGAAACAATTTCTGGTACACCAACCATCAGAAGCTTTGATCAGCAGTCCAGATTTCAGGAAAAGAATTTGAAACTGATCGACAGATATTCGCGACCAGAGTTCAATAGTGCTGCTGCATCAGAATGGTTGTGCTTCCGTTTAGATATATTGTCTTCTATCATCTTTGCATTTTCCTTGATATTCTTGATATCCATTCCAGAAGGATTCATAGATCCAGGCCTTGCTGGTTTATCTGTTACCTATGGACTAAATTTGACCACAATAAATGCTTGGGTGATATGGAGTCTTTGCAGTTTGGAGAACAATATTATATCAGTGGAAAGAATACTTCAGTATACTTCCATTCCTAGTGAGCCTCCCGAAGAAAATCGACCGGATCCTTCTTGGCCTTCACACGGCGAGGTTAATATACATGAATTGCAGGTTCGTTATGCTCCACACCTTCCACTTGTGTTGCATGGCCTCACATGCACATTTCGCGGAGGATGGAGAACTGGAATTGTTGGTAGAACAGGAAGTGGCAAAACAACTCTCATACAAACTCTTTTCCGAATTGTTGAACCAACTGCTGGAGAAGTTGTGATTGATGGCATCAACATCTCTTCAATAGGACTTCATGATTTGAGGTCTAGATTAAGCATTATTCCTCAGGATCCAACCATGTTTGAAGGGACTGTGAGAAACAATCTGGATCCACTAGAGGAGTACACAGATGAACAAATTTGGGAGGCCCTTGATAAGTGTCAACTTGGTGATGAAGTTAGAAAGAAAGAAGGAAAGCTGGACTCTCCAGTTAGTGAGAATGGTGAAAATTGGAGCATGGGTCAGAGGCAATTGGTGTGCCTAGGTAGGGTGCTTCTGAAGAAGAGCAAGGTATTGGTACTCGACGAAGCGACTGCATCAGTTGATACTGCTACGGACAATTTAATTCAACAAACTCTTAGGTTGCATTTCACTGAGTCCACAGTCATAACCATTGCGCATAGAATCACTTCTGTTCTTGACAGCGATATGGTCTTGCTTCTTCATCAAGGACTAATTGAGGAGTATGATTCACCTTCAAAATTGCTAGAGGATAAGTCATCATCTTTTGCTCAACTTGTTGCAGAGTATACAATGAGATCTAAGTCCACTCTTCAGAAATTTGCTTATCAATGA 4548 0.3883 MMSYVSSYLSLMHSHISFLLQPIFLHAFSAIIHLLLLAIVLVSWLWKKIITVGETGDDSNNKHQKPLNNAVLRKTTLFCSLGXSAFNLILCLYSYYFLGEKEKEEEKLVTHLDLGLKTLAWGVISVCLHKSLLLFSSGDGRRRFSFMFRAWCVFYFFVSCYSFVVDFVLHFYEKHVTLPAQDIVSDVISASVGLFFCYVVCFVKKIDEXEEXHIIDDLQDPLLLDNGNATVCSNASGADIVTPFSNAGIFSILTFSWVGPLVSLGNKKTLDLEDVPLLDKRDSVVEIFXTFREKVEEDCGAINXITTLKLVKLLVLSAWKEILFTAFLALLNALASYVGPYLIDAFVQYLDGQRVYENQGYVLVSAFFLSNLVQSLSQRHWFFRLQQVGIRIQALLVTMIYNKALTLSCQSKQGHTSGEMINFMTVDAERVGTFTWYMHDLWRVALQIVLALLILYRSVGLASIAAFVATVIVMLVNVPVGKMQQKFQKNLMDSKDARMKATSEILRNMKILKLQGWEMKFLSKINELRKXEEGWLKKSVYNSAISAFVFWIAPSFVSVVTFGTCMVMGIPLESGKILSALATFRILQGAIYNLPETISAIVQTKVSLDRISSFLRLGDLQSDVVEKLPLGTSDKAIEVTNGNFSWDPSSPNTTLKNINFEVFHGMRVAVCGTVGSGKSTLLSCMLGEVPKVSGTLKVCGTKAYVAQSPWIQSGKIEDNILFGKEMDKEKYEKVLEACSLKKDLEILSFGDQTIIGERGINMSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFKECLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQCGKYADLLNNGTDFMELVGAHKKALSTLDSIDERIISNEICTLEQDSDFPISQGGEEEEEKKDEQNGKTGKKGDEAKGQLVQEEERESGRVGFSVYWQYITMAYGGALVPFILLAHTLFQVLQIGSNYWMAWATPISQDVEPPVSXTTLIAVYIALAVXSSFCILARTILFATALCKTATIIFNKMHFCIFRAPMAFFDSTPSGRILNRASTDQSSVDTEVPYQFASFVFPLIQLVGIIAVMSQAAWQVFIVFIPVIAISIWYQQYYLPAARELSRLVGVCKAPIIQNFSETISGTPTIRSFDQQSRFQEKNLKLIDRYSRPEFNSAAASEWLCFRLDILSSIIFAFSLIFLISIPEGFIDPGLAGLSVTYGLNLTTINAWVIWSLCSLENNIISVERILQYTSIPSEPPEENRPDPSWPSHGEVNIHELQVRYAPHLPLVLHGLTCTFRGGWRTGIVGRTGSGKTTLIQTLFRIVEPTAGEVVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSPVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRLHFTESTVITIAHRITSVLDSDMVLLLHQGLIEEYDSPSKLLEDKSSSFAQLVAEYTMRSKSTLQKFAYQ* 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0088 1515 CDD ABC_6TM_ABCC_D2 949 1243 IPR044726 GO:0140359
Amo07g0088 1515 Pfam ABC transporter 655 789 IPR003439 GO:0005524
Amo07g0088 1515 Gene3D ABC transporter type 1, transmembrane domain 912 1249 IPR036640 GO:0005524|GO:0016021
Amo07g0088 1515 Gene3D ABC transporter type 1, transmembrane domain 303 617 IPR036640 GO:0005524|GO:0016021
Amo07g0088 1515 Gene3D - 1250 1501 IPR027417 -
Amo07g0088 1515 Pfam ABC transporter 1282 1430 IPR003439 GO:0005524
Amo07g0088 1515 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524
Amo07g0088 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 323 603 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo07g0088 1515 MobiDBLite consensus disorder prediction 887 923 - -
Amo07g0088 1515 CDD ABC_6TM_ABCC_D1 336 611 IPR044746 GO:0140359
Amo07g0088 1515 SUPERFAMILY ABC transporter transmembrane region 950 1248 IPR036640 GO:0005524|GO:0016021
Amo07g0088 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1256 1495 IPR027417 -
Amo07g0088 1515 CDD ABCC_MRP_domain2 1263 1483 - -
Amo07g0088 1515 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 122 1511 - -
Amo07g0088 1515 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 122 1511 - -
Amo07g0088 1515 Pfam ABC transporter transmembrane region 957 1193 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo07g0088 1515 Pfam ABC transporter transmembrane region 323 590 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo07g0088 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 859 IPR027417 -
Amo07g0088 1515 CDD ABCC_MRP_domain1 637 837 - -
Amo07g0088 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 951 1231 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo07g0088 1515 SMART AAA_5 664 837 IPR003593 -
Amo07g0088 1515 SMART AAA_5 1291 1476 IPR003593 -
Amo07g0088 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 637 860 IPR003439 GO:0005524
Amo07g0088 1515 Gene3D - 622 879 IPR027417 -
Amo07g0088 1515 MobiDBLite consensus disorder prediction 894 923 - -
Amo07g0088 1515 SUPERFAMILY ABC transporter transmembrane region 316 615 IPR036640 GO:0005524|GO:0016021
Amo07g0088 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1267 1499 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0088 Amo-Chr7 1029552 1035173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0088 637 878 Calmodulin-binding Proteins AT2G36910 29.572 1.43e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0088 - K05666 gmx:100811245 2209.11