Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0080 ATGCCGGAGCTTCGTAGTGGACCGCGGCGTGGTCGTGCTCAGGTAGGCCGTAGAATCGCTGAACCACCGTCTCCGGCGGCCAACTACGTGAAGACTCGAGCTGCGGTCGCCAGGGCGGCTGCGGCAGCGGCGACGGTGGCCGAGGAGAGGCCCAGGACCCGCTTGGCGGCGAAGAAGTTGGAGCAGGAGGAGAAGCCAGTGATTGTGATATCGGAAGAGGAGGCCGAGAGCGACGTAGAGCGCGCGAAGAATAAGAAGAGCGAAGAGCGGATTGAAGTCGGCGTAATGGGTGACGAGAGTGGCGGGTTGAGTGCCAACAAGGGCGTTGCTCAAGAGGATGAGGGCAACACAGCTCCTTTTCCTGAGAGGGTTCAAGTGGGAGGATCACCTGTCTACAAGGTGGATAGGAAGCTGGGCAAAGGTGGCTTTGGTCAAGTCTTTGTTGGCCGTCGAGTTACCGGGGGTAATGATCGTACTAGTGGCCCTGGGGCTACTGAGGTGGCTCTAAAATTTGAACATAGGAATAGTAAAGGCTGTAATTATGGCCCTCCTTATGAGTGGCAAGTTTACAACACCCTTGGTGGCAGTCATGGAATACCAAAGGTACACTATAAAGGAAGACAAGGAGAATATTATGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTGTGGAACTCTTCAAGCCAGGCGATGCCTGCAGAAATGGTTGCATGTATAGCTGTTGAGTCCTTGTCAATCCTGGAGAAAATGCATTCAAGAGGATATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTACTAGGCCAGCCAGGGACACCACAAGAGAAGAAATTGTACCTTGTTGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCAGATATGTTTAGAGGGACTGTTCGATATGCAAGTGTTCATGCTCACTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTGGCATATACACTCATCTTCCTTCATAAAGGGCGGTTACCATGGCAAGGTTATCAGGGTGATAACAAGTCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCAGAGATGCTCTGTTGCTTCTGCCCTCCTCCTTTTAGGCAATTTCTTGAGATTGTAGTGAACATGAAATTTGATGAAGAACCAAACTATTCCAAGCTAATCTCTCTTTTTGATGGTATGCTTGGTCCAAATCCTGCATTGCGGCCGATTAACACTGAAGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAGGACGAGGATGATTCACAACCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCCAGACTACCAATGAAACAAAGGTATCACTATAATGTAGCTGATGCAAGACTAGCACAGCATGTTGAGAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTTGCATCTTGTTCCAATCTCTGGGCGCTTATTATGGATGCTGGAACTGGTTTTACAACTCAAGTTTACAAGTTGTCACCATTTTTCTTGCACAAGGAATGGATTATGGAGCAGTGGGAAAAGAACTATTATATTACTTCAATAGCTGGCGCTAATAATGGAAGCTCTCTTGTGGTGATGTCAAAAGGCACGCAGTACACACAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTCACCTCGATGGCCACTGCCGGAAGTCGCTGGGGTGTTGTTATGTCTAGAAATGCTGGATTCAGTGATCAGGTTGTTGAGCTTGATTTTCTCTATCCTAGTGAGGGCATCCACAGACGATGGGATAATGGTTACAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATATTAAGTATTCCAAGGCGCAGGCCAGGTGATGAAACTCAGGAAACACTACGCACATCTCAATTTCCCAGCACACACGTTAAGGAAAAATGGTCAAAGAACCTTTATCTTGCTTGTTTGTGCTATGGGCGCACTGTATGCTGA 2085 0.4705 MPELRSGPRRGRAQVGRRIAEPPSPAANYVKTRAAVARAAAAAATVAEERPRTRLAAKKLEQEEKPVIVISEEEAESDVERAKNKKSEERIEVGVMGDESGGLSANKGVAQEDEGNTAPFPERVQVGGSPVYKVDRKLGKGGFGQVFVGRRVTGGNDRTSGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMPAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTPQEKKLYLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEIVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEDEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFTTQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0080 694 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 86 665 - -
Amo07g0080 694 SMART serkin_6 132 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0080 694 CDD STKc_CK1 132 407 - -
Amo07g0080 694 PANTHER CASEIN KINASE-RELATED 86 665 - -
Amo07g0080 694 SUPERFAMILY Protein kinase-like (PK-like) 132 415 IPR011009 -
Amo07g0080 694 Gene3D Transferase(Phosphotransferase) domain 1 106 451 - -
Amo07g0080 694 Coils Coil 70 92 - -
Amo07g0080 694 MobiDBLite consensus disorder prediction 1 26 - -
Amo07g0080 694 ProSiteProfiles Protein kinase domain profile. 132 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0080 694 Pfam Protein kinase domain 132 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0080 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Amo07g0080 694 ProSitePatterns Protein kinases ATP-binding region signature. 138 170 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0080 Amo-Chr7 973627 979488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0080 91 405 MAP Kinase Kinase Kinase AT4G08500 21.231 2.71e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Amo07g0080 Pkinase 2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0080 - - gmx:100819969 1263.83