Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0079 ATGCTCAACTTTAACTTTTATCCCTTTGAGTTGTGTATTCAAATGGCATCAACATCTTGTGTGAGTAACATGCCATTACCCGCCACTACTATGACTTGGAACTCTCACCAAAATCCTGCACCACTTGCAAAGTATGAGGAGGTTACAACGAATCCCAAGCTTTTCATGAGTACTCTAGAGAAGCTCCATGCTGATATGGGAACCAAGTTCATGATACCCATTATTGGAGGAAAAGAACTGGATCTGTTTCACCTCTTCATTGAAGTGACTTCTCGAGGAGGGATTGAGAAGATTATCAAAGAGAGAAGATGGAAAGAAGTAACTCAAACTTTCAACTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGCAAGTACTACTCTTCACTACTTTACCACTATGAACAAATTTACTACTTTAGAGCCGCAACTGGATGGAACCCTACTTTAACTGCTTCTTCTACTGCTGATGTTGTGCAAAGAGCACAATTTTCACAGCCTTGTCTTGGCTTCCAACATTCAAGGGTTGATGCTACTGCCGAATCATCTCAAGGATCTGCAGCAGTAGTTGGAGTGATCGATGCAAAATTTGAAAGTGGATATCTGATTACAGTTTCAATAGGTTCAGAGGTGCTGAAAGGTGTACTTTATCAGGATCCACATCCACATCCACATCCACAGGGAGCATTTCAGAGTGTTATGGCCAAGAACACCAACAATAATTGTAATTCTTCATTGGGTGTTGTCCACCGTCGTCGTCGTAGGAAGAAATCAGAGATCAAAAGGAGGGATCCTGCTCATCCAAAACCTAACAGAAGTGGCTACAATTTCTTCTTTGCTGAGCAACATGCAAGACTAAAACCACTACACCAAGCCAAGGACAGAGAGATTAGTAGGATCATTGGTGAACTTTGGAACAAGTTAAAAGATCCCGAAAGATTAGTATATCAAGAGAAGGCTTTAAAGGATAAAGAGAGGTACAAAGCAGAAATGGAAGATTATCGCCAGAAACGCAACAATAATAATAATGCTGCTATGCTGCCATTGCAACAACAGCTTCCGGAAATGGATGAGAACGAGGAAGGCTCTCTTCAAAGTCAAACTCCTGAAGAGGAGAGCACTTCTGGTGGTAGCGAAAATGAGAATGATATTAACATGGATGCTTCTCTTCCTCTTCCTCCTGTTACTACTACTACACTGCCTCCTCAACCTACATTTTTTAGTTTAGACAAACCATCCATGGAAGGAGATTATAACCTTGGACATCAAAATATCCATGACTCAAAAAATATGTTGACAATGCTTTAG 1311 0.4073 MLNFNFYPFELCIQMASTSCVSNMPLPATTMTWNSHQNPAPLAKYEEVTTNPKLFMSTLEKLHADMGTKFMIPIIGGKELDLFHLFIEVTSRGGIEKIIKERRWKEVTQTFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRAATGWNPTLTASSTADVVQRAQFSQPCLGFQHSRVDATAESSQGSAAVVGVIDAKFESGYLITVSIGSEVLKGVLYQDPHPHPHPQGAFQSVMAKNTNNNCNSSLGVVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQAKDREISRIIGELWNKLKDPERLVYQEKALKDKERYKAEMEDYRQKRNNNNNAAMLPLQQQLPEMDENEEGSLQSQTPEEESTSGGSENENDINMDASLPLPPVTTTTLPPQPTFFSLDKPSMEGDYNLGHQNIHDSKNMLTML* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0079 436 Coils Coil 318 345 - -
Amo07g0079 436 Gene3D High mobility group box domain 253 355 IPR036910 -
Amo07g0079 436 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 269 336 IPR009071 -
Amo07g0079 436 CDD ARID_HMGB9-like 51 136 IPR045303 GO:0003677
Amo07g0079 436 MobiDBLite consensus disorder prediction 358 386 - -
Amo07g0079 436 SUPERFAMILY ARID-like 45 142 IPR036431 GO:0003677
Amo07g0079 436 MobiDBLite consensus disorder prediction 358 410 - -
Amo07g0079 436 SMART bright_3 50 141 IPR001606 GO:0003677
Amo07g0079 436 Pfam HMG (high mobility group) box 269 336 IPR009071 -
Amo07g0079 436 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 14 388 - -
Amo07g0079 436 SMART ARID_2 46 136 - -
Amo07g0079 436 Pfam ARID/BRIGHT DNA binding domain 53 136 IPR001606 GO:0003677
Amo07g0079 436 SUPERFAMILY HMG-box 256 348 IPR036910 -
Amo07g0079 436 SMART hmgende2 268 337 IPR009071 -
Amo07g0079 436 CDD HMGB-UBF_HMG-box 269 333 - -
Amo07g0079 436 Gene3D - 28 146 IPR036431 GO:0003677
Amo07g0079 436 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 388 - -
Amo07g0079 436 MobiDBLite consensus disorder prediction 251 276 - -
Amo07g0079 436 ProSiteProfiles ARID domain profile. 49 140 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0079 Amo-Chr7 968128 970890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0079 15 358 ARID Transcription Factor Family AT1G04880 56.233 3.98e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Amo07g0079 ARID 3.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0079 - - gmx:100783284 419.468