Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0056 ATGAATACGATGAAGAAAGGCGGTTGCCAGAAATCTTCAATATCAGGGCAGCCTTACAGTTCGCTGTATTTCAATCCGCTGAATGAAAATGGGGATGAGGATGAGGTGAGACAGAAGCGCACCCGCACGCGTAGCTGCAGCGACTACGGCCTTCGCAGCTTAGCCTCCGGCTTTGAGGACGATAGCAACAAGGAAAACAACGCCGCCATCATCAATGGCTCTTCTATTTCTCTTTCTCTGCCCGCTCCTAAGATTAGGAAGCACTTCCCATCAAAGTCCACAGACACGATCTTGAAGCCGTCGTCGCTCCAGTTGTGCATGCAGATGAACGAGCCTGAGAGGGCTTTTGGCTCTTCCAATATCTGGGACTATGCTGACTCCGACGCAGCTCCTGCGTCTTCCTGGTCCACTTTACCTAACCGCTCTTTGATCTGCAGGCCCTTGCCCATTGATATTGGAAGATGTACATGCCTTATTCTGAAGGAGCCCACTCCACAAGGCCATGGCACTCTCTATTCTCTTTATACCTATGAAGGTCAGGGACGCCAGAATAGGAAATTAGCAGTGGCCCATCACAAGCGGCGGAATGGCAAATCTCACTTCACAGTAGCTCAGAATGTAAAAGGACTCTTATCCAATTTAGATGATACTTTCCTTGGGACCATGACAGCTAACCTCATCGGCTCAAAATACCATATCTGGGATCAGGGATATCGACCTAATTCCCGCAATACGCAACCGAAATTACCTCTTGCTGTAGTGACGTATATACCAACAGTGGCAACATGTACCGGAAGTCACAGAAGCATGAGAGCATATATCCCCAAGCATCAATCTCTGTCACTGAAGAATGTCACACAGTTACAACATATTAAAGGGTTGCCATTGGATTGGGAGGAGAAATGGGACACAGTGCATCAACTATTCTCAAAGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAAGGCAGAACTTAGAATCCAAAGATCGGTGAAAAATTTCCAGCTCACTTTAGAGGAGAATGGGAAGCAGACGATCCTGCAGCTAGGCAGGGTGGGAAAATCAAAATTCGTTATGGACTACAGATATCCACTGACAGGCTACCAAGCTTTTTGCATGTGTCTGGCTTCCATTGATACAAAGCTTTGCTGCACAGTGTAG 1188 0.4663 MNTMKKGGCQKSSISGQPYSSLYFNPLNENGDEDEVRQKRTRTRSCSDYGLRSLASGFEDDSNKENNAAIINGSSISLSLPAPKIRKHFPSKSTDTILKPSSLQLCMQMNEPERAFGSSNIWDYADSDAAPASSWSTLPNRSLICRPLPIDIGRCTCLILKEPTPQGHGTLYSLYTYEGQGRQNRKLAVAHHKRRNGKSHFTVAQNVKGLLSNLDDTFLGTMTANLIGSKYHIWDQGYRPNSRNTQPKLPLAVVTYIPTVATCTGSHRSMRAYIPKHQSLSLKNVTQLQHIKGLPLDWEEKWDTVHQLFSKVPLYNKISKQFELDFRDKGKAELRIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCMCLASIDTKLCCTV* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0056 395 PANTHER TUBBY-RELATED 9 393 - -
Amo07g0056 395 SUPERFAMILY Tubby C-terminal domain-like 132 394 IPR025659 -
Amo07g0056 395 MobiDBLite consensus disorder prediction 1 41 - -
Amo07g0056 395 PRINTS Tubby superfamily signature 218 242 IPR000007 -
Amo07g0056 395 PRINTS Tubby superfamily signature 308 325 IPR000007 -
Amo07g0056 395 PRINTS Tubby superfamily signature 351 370 IPR000007 -
Amo07g0056 395 PRINTS Tubby superfamily signature 372 394 IPR000007 -
Amo07g0056 395 Pfam Tub family 146 389 IPR000007 -
Amo07g0056 395 MobiDBLite consensus disorder prediction 1 27 - -
Amo07g0056 395 PANTHER TUBBY-LIKE PROTEIN 8 9 393 - -
Amo07g0056 395 Gene3D Tubby Protein; Chain A 140 388 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0056 Amo-Chr7 650004 652176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0056 88 288 TUB Transcription Factor Family AT1G16070 54.091 8.03e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Amo07g0056 Tub 7.3e-42 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0056 K19600 - jre:109010979 478.789