Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0050 ATGGGAACTTGCTGGGGTTCTCCAAAATTACCACCCCATAACTCCAACCCAACTACCACCACCACCACCACCACCGGTAACCTCAGCGGAGGTACGGCATCAACGTCAACGTCAACGTCAACGTCAACGTTAACGTTAACCTCAACGGGGACATCCCGCGTCACGAGCAGCAGCTGCAGCTACACGACTTCGTCGGGAAGTGGGAACATCAGCTCCGTAAGCAAGTTCTCCGATGATCATTATCCCGACGGCCAGATCCTACCTGCCGCAAATCTCAGGATCTTCACCTTCGCAGAGTTGAAGGCTGCCACTAGRAATTTCAGACTTGACACCGTGCTTGGCGAGGGAGGTTTCGGCAAGGTCTACAAGGGGTGGCTCGAAGACAAGCCATCCTCCAAGAATGCAAATGGAACCGTCATTGCCGTCAAAAAATTGAACTCCGAAAGCTTACAGGGGCTTGAGGAGTGGAAGTCAGAAGTAAATTTTCTGGGACGCCTCTCTCATCCTAACCTTGTTAAGTTGTTGGGATACTGCTTGGAGGAAGCAGAACTTCTTCTCATCTATGAATTTATGCAGAAAGGCAGTTTGGAAAACCACCTATTCGGAAGGGGCTCTGCTGTTCAACCACTTCCATGGGATATTAGGCTTAAGATTGCAATCGGAGCAGCTCGTGGCCTGGCCTTCTTGCATACATCCGAGAAAGTAATTTACAGAGACTTCAAGGCCTCCAATATATTGCTCGATGGGGCCTATAATGCAAAGATATCAGACTTTGGCTTGGCAAAACTGGGTCCTTCAGCTAGTCGCTCCCATGTGACAACTAGGGTGATGGGCACATATGGTTATGCAGCTCCTGAATATGTTGCTACAGGGCATCTGTATGTGAAGAGTGACGTGTATGCATTTGGAGTAGTTTTGGTGGAGATGCTAACAGGGCTACGAGCACTTGACCCAAACCGCCCAAGTGGGCAACATAATCTAACAGATTGGATCAAACCATACCTGCATGATAGAAGAAAGCTGAAAAGCATTATGGATTTTCGGTTGGAAGGAAAATATCCRTCCAAAGYTGCATTTCGTATAGCTCAGCTTGCGCTGAGATGTCTTGAAACTGAGCCCAAACAGCGGCCGTCAATGAAGGAAGTTTTGGAGAGCTTGGAGCGATTTCATGCTGCCAATGAGAAACCTATGGAGCCAAAATCTGGTTCTAATCATACTCATAGCCGTCGAGGTCAGCAAGCTGTGCACCATCGTTCTCCACTCCATCCATAG 1272 0.4843 MGTCWGSPKLPPHNSNPTTTTTTTTGNLSGGTASTSTSTSTSTLTLTSTGTSRVTSSSCSYTTSSGSGNISSVSKFSDDHYPDGQILPAANLRIFTFAELKAATRNFRLDTVLGEGGFGKVYKGWLEDKPSSKNANGTVIAVKKLNSESLQGLEEWKSEVNFLGRLSHPNLVKLLGYCLEEAELLLIYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGAYNAKISDFGLAKLGPSASRSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYAFGVVLVEMLTGLRALDPNRPSGQHNLTDWIKPYLHDRRKLKSIMDFRLEGKYPSKXAFRIAQLALRCLETEPKQRPSMKEVLESLERFHAANEKPMEPKSGSNHTHSRRGQQAVHHRSPLHP* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0050 423 MobiDBLite consensus disorder prediction 9 46 - -
Amo07g0050 423 PANTHER OS01G0588500 PROTEIN-RELATED 39 403 - -
Amo07g0050 423 ProSitePatterns Protein kinases ATP-binding region signature. 113 144 IPR017441 GO:0005524
Amo07g0050 423 SUPERFAMILY Protein kinase-like (PK-like) 84 386 IPR011009 -
Amo07g0050 423 CDD STKc_IRAK 113 389 - -
Amo07g0050 423 MobiDBLite consensus disorder prediction 379 423 - -
Amo07g0050 423 Pfam Protein tyrosine and serine/threonine kinase 109 386 IPR001245 GO:0004672|GO:0006468
Amo07g0050 423 Gene3D Transferase(Phosphotransferase) domain 1 191 413 - -
Amo07g0050 423 MobiDBLite consensus disorder prediction 379 405 - -
Amo07g0050 423 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 39 403 - -
Amo07g0050 423 MobiDBLite consensus disorder prediction 1 46 - -
Amo07g0050 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Amo07g0050 423 Gene3D Phosphorylase Kinase; domain 1 91 190 - -
Amo07g0050 423 ProSiteProfiles Protein kinase domain profile. 107 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0050 Amo-Chr7 597340 599975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0050 90 414 Receptor kinase-like Gene Family AT4G02010 48.632 4.48e-100 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo07g0050 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0050 - - gmx:100305417 622.468